Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   D7D50_RS02030 Genome accession   NZ_CP032620
Coordinates   381647..382051 (-) Length   134 a.a.
NCBI ID   WP_120702309.1    Uniprot ID   -
Organism   Streptococcus koreensis strain KCOM 2890 (=JS71)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376647..387051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D50_RS02000 (D7D50_02000) - 377483..378157 (-) 675 WP_227877753.1 CPBP family intramembrane glutamic endopeptidase -
  D7D50_RS02005 (D7D50_02005) - 378310..379506 (-) 1197 WP_120701350.1 acetate kinase -
  D7D50_RS02010 (D7D50_02010) comYH 379555..380508 (-) 954 WP_120701351.1 class I SAM-dependent methyltransferase Machinery gene
  D7D50_RS02015 (D7D50_02015) comGG 380540..380923 (-) 384 WP_418856565.1 competence type IV pilus minor pilin ComGG -
  D7D50_RS02020 (D7D50_02020) comGF/cglF 380952..381404 (-) 453 WP_162614527.1 competence type IV pilus minor pilin ComGF Machinery gene
  D7D50_RS02025 (D7D50_02025) comGE 381388..381681 (-) 294 WP_120701354.1 competence type IV pilus minor pilin ComGE -
  D7D50_RS02030 (D7D50_02030) comGD/cglD 381647..382051 (-) 405 WP_120702309.1 competence type IV pilus minor pilin ComGD Machinery gene
  D7D50_RS02035 (D7D50_02035) comGC/cglC 382041..382358 (-) 318 WP_023027561.1 competence type IV pilus major pilin ComGC Machinery gene
  D7D50_RS02040 (D7D50_02040) comYB 382355..383377 (-) 1023 WP_120701355.1 competence type IV pilus assembly protein ComGB Machinery gene
  D7D50_RS02045 (D7D50_02045) comYA 383301..384260 (-) 960 WP_120701356.1 competence type IV pilus ATPase ComGA Machinery gene
  D7D50_RS02050 (D7D50_02050) - 384365..384742 (-) 378 WP_120701357.1 DUF1033 family protein -
  D7D50_RS02060 (D7D50_02060) - 385102..386205 (-) 1104 WP_120701358.1 glycosyl hydrolase family 8 -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14978.26 Da        Isoelectric Point: 6.2348

>NTDB_id=317122 D7D50_RS02030 WP_120702309.1 381647..382051(-) (comGD/cglD) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
MEIKAFTLLESLLTLGIVSLLCWLLAGSVHQGFGQVEETLFFSEFERVYQETQKMSIAREERTLLSIDQGGVHSPHQELP
LPKGVELIKEKQLTFDPAGGNSSLTKIQFQTEKEVVTYQLAIGNGKIKKSTTPR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=317122 D7D50_RS02030 WP_120702309.1 381647..382051(-) (comGD/cglD) [Streptococcus koreensis strain KCOM 2890 (=JS71)]
TTGGAGATTAAGGCTTTTACCCTTCTAGAGAGCTTACTAACTCTAGGTATCGTCAGCCTTCTATGCTGGCTGCTAGCTGG
ATCAGTTCATCAAGGCTTTGGGCAGGTGGAAGAAACATTGTTTTTCTCAGAATTTGAACGGGTCTATCAAGAGACACAAA
AGATGAGCATTGCAAGAGAGGAGAGAACCCTTCTTTCCATCGACCAAGGTGGGGTTCATAGCCCGCATCAAGAATTGCCA
CTTCCAAAAGGGGTGGAACTGATTAAAGAGAAGCAACTGACATTTGATCCAGCAGGAGGCAATTCAAGCTTGACCAAGAT
TCAATTTCAGACAGAGAAAGAGGTGGTGACCTATCAGTTGGCAATTGGGAATGGAAAAATTAAGAAATCGACAACTCCCC
GCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

53.543

94.776

0.507
  comGD/cglD Streptococcus pneumoniae Rx1

52.756

94.776

0.5
  comGD/cglD Streptococcus pneumoniae D39

52.756

94.776

0.5
  comGD/cglD Streptococcus pneumoniae R6

52.756

94.776

0.5
  comGD/cglD Streptococcus mitis NCTC 12261

51.938

96.269

0.5
  comGD/cglD Streptococcus mitis SK321

51.969

94.776

0.493
  comYD Streptococcus gordonii str. Challis substr. CH1

48.485

98.507

0.478
  comYD Streptococcus mutans UA140

48.837

96.269

0.47
  comYD Streptococcus mutans UA159

48.837

96.269

0.47

Multiple sequence alignment