Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | DDV21_RS00765 | Genome accession | NZ_CP031733 |
| Coordinates | 124729..125055 (+) | Length | 108 a.a. |
| NCBI ID | WP_116878369.1 | Uniprot ID | A0A372KL36 |
| Organism | Streptococcus chenjunshii strain Z15 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 119729..130055
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDV21_RS00745 (DDV21_000745) | - | 121334..121963 (-) | 630 | WP_116878372.1 | hypothetical protein | - |
| DDV21_RS00750 (DDV21_000750) | - | 122393..122755 (+) | 363 | WP_116878385.1 | DUF1033 family protein | - |
| DDV21_RS00755 (DDV21_000755) | comYA | 122820..123761 (+) | 942 | WP_116878371.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DDV21_RS00760 (DDV21_000760) | comYB | 123667..124728 (+) | 1062 | WP_116878370.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DDV21_RS00765 (DDV21_000765) | comYC | 124729..125055 (+) | 327 | WP_116878369.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DDV21_RS00770 (DDV21_000770) | comYD | 125006..125461 (+) | 456 | WP_259293365.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DDV21_RS00775 (DDV21_000775) | comGE | 125415..125708 (+) | 294 | WP_116878368.1 | competence type IV pilus minor pilin ComGE | - |
| DDV21_RS00780 (DDV21_000780) | comYF | 125662..126120 (+) | 459 | WP_116878367.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DDV21_RS00785 (DDV21_000785) | comGG | 126107..126484 (+) | 378 | WP_116878366.1 | competence type IV pilus minor pilin ComGG | - |
| DDV21_RS00790 (DDV21_000790) | comYH | 126990..127946 (+) | 957 | WP_116878383.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DDV21_RS00795 (DDV21_000795) | - | 127998..129191 (+) | 1194 | WP_116878365.1 | acetate kinase | - |
| DDV21_RS11695 | - | 129323..129478 (-) | 156 | WP_162886265.1 | hypothetical protein | - |
| DDV21_RS00800 (DDV21_000800) | - | 129488..129928 (-) | 441 | WP_116878364.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 11938.03 Da Isoelectric Point: 10.0737
>NTDB_id=310812 DDV21_RS00765 WP_116878369.1 124729..125055(+) (comYC) [Streptococcus chenjunshii strain Z15]
MKKILIAIKEGKAPSFTLLEMLFVLLIISVLLLLFVPNLAKQKDKVNNTGNAAVVKVVESQAELYELNENAPATLSKLVA
EGSISAKQQKAYNDYYAKNSKETRRIAN
MKKILIAIKEGKAPSFTLLEMLFVLLIISVLLLLFVPNLAKQKDKVNNTGNAAVVKVVESQAELYELNENAPATLSKLVA
EGSISAKQQKAYNDYYAKNSKETRRIAN
Nucleotide
Download Length: 327 bp
>NTDB_id=310812 DDV21_RS00765 WP_116878369.1 124729..125055(+) (comYC) [Streptococcus chenjunshii strain Z15]
ATGAAAAAAATATTAATAGCCATAAAAGAAGGTAAAGCACCAAGTTTTACTCTGCTTGAAATGTTATTTGTTTTACTCAT
CATCAGTGTTTTACTTTTGTTGTTTGTTCCAAATTTAGCTAAACAAAAAGATAAAGTTAACAATACCGGAAATGCTGCTG
TTGTCAAAGTGGTTGAGAGTCAGGCTGAACTTTATGAATTAAACGAGAATGCACCGGCAACGCTAAGCAAATTAGTCGCC
GAAGGCAGTATCAGTGCAAAACAGCAGAAGGCTTACAATGACTATTATGCAAAAAATTCTAAAGAAACACGTCGTATCGC
AAATTAA
ATGAAAAAAATATTAATAGCCATAAAAGAAGGTAAAGCACCAAGTTTTACTCTGCTTGAAATGTTATTTGTTTTACTCAT
CATCAGTGTTTTACTTTTGTTGTTTGTTCCAAATTTAGCTAAACAAAAAGATAAAGTTAACAATACCGGAAATGCTGCTG
TTGTCAAAGTGGTTGAGAGTCAGGCTGAACTTTATGAATTAAACGAGAATGCACCGGCAACGCTAAGCAAATTAGTCGCC
GAAGGCAGTATCAGTGCAAAACAGCAGAAGGCTTACAATGACTATTATGCAAAAAATTCTAAAGAAACACGTCGTATCGC
AAATTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
66.667 |
94.444 |
0.63 |
| comYC | Streptococcus mutans UA140 |
67.327 |
93.519 |
0.63 |
| comYC | Streptococcus mutans UA159 |
67.327 |
93.519 |
0.63 |
| comGC/cglC | Streptococcus mitis SK321 |
64.151 |
98.148 |
0.63 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
63.462 |
96.296 |
0.611 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.434 |
98.148 |
0.583 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.434 |
98.148 |
0.583 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.434 |
98.148 |
0.583 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.434 |
98.148 |
0.583 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
56 |
92.593 |
0.519 |
| comYC | Streptococcus suis isolate S10 |
58.696 |
85.185 |
0.5 |
| comGC | Staphylococcus aureus MW2 |
49.367 |
73.148 |
0.361 |
| comGC | Staphylococcus aureus N315 |
49.367 |
73.148 |
0.361 |