Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DDV21_RS00760 Genome accession   NZ_CP031733
Coordinates   123667..124728 (+) Length   353 a.a.
NCBI ID   WP_116878370.1    Uniprot ID   -
Organism   Streptococcus chenjunshii strain Z15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118667..129728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS00745 (DDV21_000745) - 121334..121963 (-) 630 WP_116878372.1 hypothetical protein -
  DDV21_RS00750 (DDV21_000750) - 122393..122755 (+) 363 WP_116878385.1 DUF1033 family protein -
  DDV21_RS00755 (DDV21_000755) comYA 122820..123761 (+) 942 WP_116878371.1 competence type IV pilus ATPase ComGA Machinery gene
  DDV21_RS00760 (DDV21_000760) comYB 123667..124728 (+) 1062 WP_116878370.1 competence type IV pilus assembly protein ComGB Machinery gene
  DDV21_RS00765 (DDV21_000765) comYC 124729..125055 (+) 327 WP_116878369.1 competence type IV pilus major pilin ComGC Machinery gene
  DDV21_RS00770 (DDV21_000770) comYD 125006..125461 (+) 456 WP_259293365.1 competence type IV pilus minor pilin ComGD Machinery gene
  DDV21_RS00775 (DDV21_000775) comGE 125415..125708 (+) 294 WP_116878368.1 competence type IV pilus minor pilin ComGE -
  DDV21_RS00780 (DDV21_000780) comYF 125662..126120 (+) 459 WP_116878367.1 competence type IV pilus minor pilin ComGF Machinery gene
  DDV21_RS00785 (DDV21_000785) comGG 126107..126484 (+) 378 WP_116878366.1 competence type IV pilus minor pilin ComGG -
  DDV21_RS00790 (DDV21_000790) comYH 126990..127946 (+) 957 WP_116878383.1 class I SAM-dependent methyltransferase Machinery gene
  DDV21_RS00795 (DDV21_000795) - 127998..129191 (+) 1194 WP_116878365.1 acetate kinase -
  DDV21_RS11695 - 129323..129478 (-) 156 WP_162886265.1 hypothetical protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 40594.54 Da        Isoelectric Point: 9.8885

>NTDB_id=310811 DDV21_RS00760 WP_116878370.1 123667..124728(+) (comYB) [Streptococcus chenjunshii strain Z15]
MSRTVGINKLIGLLRVDILPKKKRGLRKLRLKEQRKIIQLFNNLLESGFTLTEMVIFLKRSQLLADKYTDKMYHVLLNGQ
GLAEMMAVLGFSDAVFTQLTLAGIHGNTRKSLLRIESYLKSLLLVRQKLIEAGTYPLLLLSFLVLLMLGLKNYLLPQLEE
NNFASQILNHFPVFLVSLMFISVVLALIVYLFAQRLPRIRFVAWLSRLPLLGNYIRLYLTAYYAREWGNLVGQGIELTQI
VQIMQNQKARLFSELGIDMEEGLISGEEFHTKVLDYPFFCKELSLIIEYGEVKSKLGKELEIYAQETWEAFFNQLIKITQ
IIQPIVFIAVALMIVMIYAAMLLPMYQNIGGNF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=310811 DDV21_RS00760 WP_116878370.1 123667..124728(+) (comYB) [Streptococcus chenjunshii strain Z15]
ATGTCCCGGACAGTTGGAATAAACAAATTGATAGGCTTGTTAAGGGTGGATATATTACCAAAGAAGAAGCGAGGCTTGAG
AAAATTAAGGCTTAAAGAACAGAGGAAAATCATTCAACTGTTCAATAACCTTCTTGAAAGTGGCTTTACATTAACAGAGA
TGGTTATCTTTCTTAAACGCAGTCAGCTTTTAGCGGATAAATATACGGATAAAATGTATCACGTATTACTCAATGGGCAG
GGGCTGGCAGAAATGATGGCAGTCCTGGGTTTTTCCGATGCTGTTTTTACGCAGCTTACTTTAGCAGGTATTCACGGCAA
CACGAGAAAAAGTCTTCTTAGAATTGAATCCTATTTAAAGAGTCTGCTTTTAGTCAGGCAAAAACTGATAGAAGCTGGAA
CCTATCCTTTACTGCTTCTGAGCTTTTTAGTTCTGTTAATGCTAGGCCTAAAAAACTATTTGCTTCCGCAGCTTGAAGAG
AATAATTTTGCCAGTCAGATTCTAAATCATTTTCCGGTATTTTTGGTATCGCTAATGTTTATTTCAGTAGTACTTGCTTT
AATTGTTTATCTCTTCGCTCAGCGTTTGCCGCGGATAAGATTTGTGGCGTGGCTGAGCCGTCTGCCTTTACTAGGAAACT
ATATCCGTCTTTATTTGACTGCTTATTATGCACGTGAATGGGGAAATTTAGTCGGTCAGGGAATCGAACTGACCCAAATT
GTACAGATTATGCAAAATCAGAAAGCTCGATTATTCAGTGAGTTAGGAATTGATATGGAAGAAGGATTAATTTCAGGAGA
AGAATTCCATACCAAGGTTCTGGATTACCCTTTCTTTTGCAAAGAGCTAAGTCTGATAATTGAATATGGAGAAGTAAAAT
CTAAACTGGGAAAAGAACTGGAGATTTATGCTCAGGAAACTTGGGAAGCATTCTTTAACCAGCTTATAAAAATAACACAG
ATTATTCAGCCTATCGTTTTTATTGCTGTTGCCTTGATGATTGTGATGATCTATGCAGCTATGCTGCTGCCAATGTATCA
AAATATAGGAGGGAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(224-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

62.145

89.802

0.558
  comYB Streptococcus mutans UA159

62.145

89.802

0.558
  comYB Streptococcus gordonii str. Challis substr. CH1

54.412

96.317

0.524
  comGB/cglB Streptococcus mitis NCTC 12261

54.878

92.918

0.51
  comGB/cglB Streptococcus pneumoniae TIGR4

53.211

92.635

0.493
  comGB/cglB Streptococcus pneumoniae Rx1

53.211

92.635

0.493
  comGB/cglB Streptococcus mitis SK321

53.211

92.635

0.493
  comGB/cglB Streptococcus pneumoniae D39

53.211

92.635

0.493
  comGB/cglB Streptococcus pneumoniae R6

53.211

92.635

0.493
  comGB Lactococcus lactis subsp. cremoris KW2

46.018

96.034

0.442

Multiple sequence alignment