Detailed information NTG0310813

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DDV21_RS00770
• Genome accession: NZ_CP031733
• Coordinates: 125006..125461 (+)
• Length: 151 a.a.
• NCBI ID: WP_259293365.1
• Uniprot ID: -
• Organism: Streptococcus chenjunshii strain Z15
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 120006..130461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DDV21_RS00745 (DDV21_000745)	-	121334..121963 (-)	630	WP_116878372.1	hypothetical protein	-
DDV21_RS00750 (DDV21_000750)	-	122393..122755 (+)	363	WP_116878385.1	DUF1033 family protein	-
DDV21_RS00755 (DDV21_000755)	comYA	122820..123761 (+)	942	WP_116878371.1	competence type IV pilus ATPase ComGA	Machinery gene
DDV21_RS00760 (DDV21_000760)	comYB	123667..124728 (+)	1062	WP_116878370.1	competence type IV pilus assembly protein ComGB	Machinery gene
DDV21_RS00765 (DDV21_000765)	comYC	124729..125055 (+)	327	WP_116878369.1	competence type IV pilus major pilin ComGC	Machinery gene
DDV21_RS00770 (DDV21_000770)	comYD	125006..125461 (+)	456	WP_259293365.1	competence type IV pilus minor pilin ComGD	Machinery gene
DDV21_RS00775 (DDV21_000775)	comGE	125415..125708 (+)	294	WP_116878368.1	competence type IV pilus minor pilin ComGE	-
DDV21_RS00780 (DDV21_000780)	comYF	125662..126120 (+)	459	WP_116878367.1	competence type IV pilus minor pilin ComGF	Machinery gene
DDV21_RS00785 (DDV21_000785)	comGG	126107..126484 (+)	378	WP_116878366.1	competence type IV pilus minor pilin ComGG	-
DDV21_RS00790 (DDV21_000790)	comYH	126990..127946 (+)	957	WP_116878383.1	class I SAM-dependent methyltransferase	Machinery gene
DDV21_RS00795 (DDV21_000795)	-	127998..129191 (+)	1194	WP_116878365.1	acetate kinase	-
DDV21_RS11695	-	129323..129478 (-)	156	WP_162886265.1	hypothetical protein	-
DDV21_RS00800 (DDV21_000800)	-	129488..129928 (-)	441	WP_116878364.1	pyridoxamine 5'-phosphate oxidase family protein	-

Sequence

Protein

• Length: 151 a.a.
• Molecular weight: 16920.69 Da
• Isoelectric Point: 9.7823

>NTDB_id=310813 DDV21_RS00770 WP_259293365.1 125006..125461(+) (comYD) [Streptococcus chenjunshii strain Z15]
MTIMQKILKKHVVSQIKGFTLLESLLTLSVTVFLIISFSGTVNGVLRKVQEQLFFLNFEYIFRDTQKLSLANHQQMMLTV
SDKEVSNGVTALALPESISPQANYRLLFDQEGGNSSLAKLIFKTADKTVTYQLYLGSGNYKKVETTGLYSP

Nucleotide

• Length: 456 bp

>NTDB_id=310813 DDV21_RS00770 WP_259293365.1 125006..125461(+) (comYD) [Streptococcus chenjunshii strain Z15]
ATGACTATTATGCAAAAAATTCTAAAGAAACACGTCGTATCGCAAATTAAAGGATTTACACTTTTGGAGAGTTTACTGAC
TCTTTCTGTGACTGTCTTTTTGATAATTAGCTTTTCAGGGACAGTAAACGGGGTCTTACGTAAAGTTCAGGAACAATTAT
TTTTTTTAAATTTCGAATACATATTTAGGGACACACAAAAACTGAGTTTGGCTAATCATCAGCAAATGATGTTAACTGTT
TCTGATAAGGAAGTCAGCAATGGTGTTACCGCTCTGGCATTGCCAGAAAGCATCAGTCCCCAGGCGAATTACCGTCTTCT
TTTTGATCAGGAGGGAGGTAATTCGTCTTTAGCTAAACTTATTTTTAAAACTGCTGATAAAACAGTCACTTATCAGCTGT
ATTTAGGGAGTGGTAATTATAAAAAAGTTGAGACTACGGGCCTATATTCTCCTTGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	55.224	88.742	0.49
comYD	Streptococcus mutans UA159	55.224	88.742	0.49
comGD/cglD	Streptococcus mitis NCTC 12261	43.939	87.417	0.384
comGD/cglD	Streptococcus mitis SK321	42.748	86.755	0.371
comGD/cglD	Streptococcus pneumoniae Rx1	42.748	86.755	0.371
comGD/cglD	Streptococcus pneumoniae D39	42.748	86.755	0.371
comGD/cglD	Streptococcus pneumoniae R6	42.748	86.755	0.371
comGD/cglD	Streptococcus pneumoniae TIGR4	42.748	86.755	0.371