Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DDV21_RS00790 | Genome accession | NZ_CP031733 |
| Coordinates | 126990..127946 (+) | Length | 318 a.a. |
| NCBI ID | WP_116878383.1 | Uniprot ID | - |
| Organism | Streptococcus chenjunshii strain Z15 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 121990..132946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDV21_RS00750 (DDV21_000750) | - | 122393..122755 (+) | 363 | WP_116878385.1 | DUF1033 family protein | - |
| DDV21_RS00755 (DDV21_000755) | comYA | 122820..123761 (+) | 942 | WP_116878371.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DDV21_RS00760 (DDV21_000760) | comYB | 123667..124728 (+) | 1062 | WP_116878370.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DDV21_RS00765 (DDV21_000765) | comYC | 124729..125055 (+) | 327 | WP_116878369.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DDV21_RS00770 (DDV21_000770) | comYD | 125006..125461 (+) | 456 | WP_259293365.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DDV21_RS00775 (DDV21_000775) | comGE | 125415..125708 (+) | 294 | WP_116878368.1 | competence type IV pilus minor pilin ComGE | - |
| DDV21_RS00780 (DDV21_000780) | comYF | 125662..126120 (+) | 459 | WP_116878367.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DDV21_RS00785 (DDV21_000785) | comGG | 126107..126484 (+) | 378 | WP_116878366.1 | competence type IV pilus minor pilin ComGG | - |
| DDV21_RS00790 (DDV21_000790) | comYH | 126990..127946 (+) | 957 | WP_116878383.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DDV21_RS00795 (DDV21_000795) | - | 127998..129191 (+) | 1194 | WP_116878365.1 | acetate kinase | - |
| DDV21_RS11695 | - | 129323..129478 (-) | 156 | WP_162886265.1 | hypothetical protein | - |
| DDV21_RS00800 (DDV21_000800) | - | 129488..129928 (-) | 441 | WP_116878364.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| DDV21_RS00805 (DDV21_000805) | proC | 130176..130946 (-) | 771 | WP_116878363.1 | pyrroline-5-carboxylate reductase | - |
| DDV21_RS00810 (DDV21_000810) | pepA | 130958..132022 (-) | 1065 | WP_116878362.1 | glutamyl aminopeptidase | - |
| DDV21_RS00815 (DDV21_000815) | - | 132084..132368 (+) | 285 | WP_116878361.1 | DUF4651 domain-containing protein | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 36189.12 Da Isoelectric Point: 4.5143
>NTDB_id=310815 DDV21_RS00790 WP_116878383.1 126990..127946(+) (comYH) [Streptococcus chenjunshii strain Z15]
MNFKKIETAYELVLENIQIIENQIKTHLYDALIEQNAFYLGASSTDQQVNDNNQRLHQLNLTKEEWRRVFQFIFIKAAQT
EQLQANHQFTPDSIGFILLFLIEQLTASNELDVLEIGSGTGNLAATLVNNSQKKLDYLGIEIDDLLIDLAASTAEVMDLS
VRFLQEDAVRPQILKASDIIISDLPVGFYPNDEIAKRYQVASPEGHTYAHHLLLEQSLKYLKKDGLALFLAPGNLLTSDQ
SGLLKNWLKDYADIIAVLTLPDSVFGNPDYTKSIFVLQKQTDHRAETFLYPLSSLQDQNILADFIENFQKWKIDNMHL
MNFKKIETAYELVLENIQIIENQIKTHLYDALIEQNAFYLGASSTDQQVNDNNQRLHQLNLTKEEWRRVFQFIFIKAAQT
EQLQANHQFTPDSIGFILLFLIEQLTASNELDVLEIGSGTGNLAATLVNNSQKKLDYLGIEIDDLLIDLAASTAEVMDLS
VRFLQEDAVRPQILKASDIIISDLPVGFYPNDEIAKRYQVASPEGHTYAHHLLLEQSLKYLKKDGLALFLAPGNLLTSDQ
SGLLKNWLKDYADIIAVLTLPDSVFGNPDYTKSIFVLQKQTDHRAETFLYPLSSLQDQNILADFIENFQKWKIDNMHL
Nucleotide
Download Length: 957 bp
>NTDB_id=310815 DDV21_RS00790 WP_116878383.1 126990..127946(+) (comYH) [Streptococcus chenjunshii strain Z15]
ATGAATTTTAAAAAAATTGAGACAGCTTATGAATTGGTTTTAGAGAATATCCAAATTATTGAAAATCAAATAAAAACTCA
CCTCTATGATGCCCTTATCGAACAAAATGCTTTCTACCTTGGCGCCAGCAGTACAGATCAGCAGGTTAATGACAACAATC
AGCGCCTGCATCAGCTGAATTTGACAAAGGAAGAATGGCGCCGTGTTTTCCAATTTATTTTTATCAAGGCAGCCCAGACT
GAACAGCTTCAGGCTAATCATCAATTTACACCGGATAGTATTGGCTTTATTCTGTTATTCTTAATAGAACAGCTGACAGC
TTCAAATGAACTGGATGTTCTGGAAATTGGCAGTGGGACAGGAAATCTGGCAGCCACTCTGGTGAACAACAGTCAAAAAA
AATTGGACTATTTAGGTATAGAGATTGATGATTTGCTTATTGATTTAGCTGCCAGCACTGCAGAGGTTATGGATTTGTCT
GTCCGTTTCTTACAAGAAGACGCTGTTCGCCCGCAGATTCTGAAAGCGAGTGATATTATCATCAGTGACTTACCCGTTGG
CTTTTATCCCAACGATGAAATTGCCAAGAGATATCAAGTTGCGAGCCCTGAAGGCCATACCTACGCTCACCATTTGCTGC
TGGAACAGTCGCTTAAGTATCTGAAAAAAGATGGCCTTGCTCTTTTTTTAGCACCGGGGAATTTGCTCACCAGTGATCAG
AGCGGCTTGTTAAAAAATTGGCTGAAAGATTATGCTGATATTATTGCAGTGCTTACTCTGCCGGATTCTGTTTTTGGAAA
TCCTGATTATACTAAGTCCATTTTTGTTTTACAAAAACAGACTGACCATAGGGCAGAAACATTCCTTTATCCATTGTCAA
GTCTGCAGGATCAGAATATTCTCGCTGATTTTATTGAAAATTTCCAAAAATGGAAAATTGATAATATGCATTTATGA
ATGAATTTTAAAAAAATTGAGACAGCTTATGAATTGGTTTTAGAGAATATCCAAATTATTGAAAATCAAATAAAAACTCA
CCTCTATGATGCCCTTATCGAACAAAATGCTTTCTACCTTGGCGCCAGCAGTACAGATCAGCAGGTTAATGACAACAATC
AGCGCCTGCATCAGCTGAATTTGACAAAGGAAGAATGGCGCCGTGTTTTCCAATTTATTTTTATCAAGGCAGCCCAGACT
GAACAGCTTCAGGCTAATCATCAATTTACACCGGATAGTATTGGCTTTATTCTGTTATTCTTAATAGAACAGCTGACAGC
TTCAAATGAACTGGATGTTCTGGAAATTGGCAGTGGGACAGGAAATCTGGCAGCCACTCTGGTGAACAACAGTCAAAAAA
AATTGGACTATTTAGGTATAGAGATTGATGATTTGCTTATTGATTTAGCTGCCAGCACTGCAGAGGTTATGGATTTGTCT
GTCCGTTTCTTACAAGAAGACGCTGTTCGCCCGCAGATTCTGAAAGCGAGTGATATTATCATCAGTGACTTACCCGTTGG
CTTTTATCCCAACGATGAAATTGCCAAGAGATATCAAGTTGCGAGCCCTGAAGGCCATACCTACGCTCACCATTTGCTGC
TGGAACAGTCGCTTAAGTATCTGAAAAAAGATGGCCTTGCTCTTTTTTTAGCACCGGGGAATTTGCTCACCAGTGATCAG
AGCGGCTTGTTAAAAAATTGGCTGAAAGATTATGCTGATATTATTGCAGTGCTTACTCTGCCGGATTCTGTTTTTGGAAA
TCCTGATTATACTAAGTCCATTTTTGTTTTACAAAAACAGACTGACCATAGGGCAGAAACATTCCTTTATCCATTGTCAA
GTCTGCAGGATCAGAATATTCTCGCTGATTTTATTGAAAATTTCCAAAAATGGAAAATTGATAATATGCATTTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
66.772 |
99.371 |
0.664 |
| comYH | Streptococcus mutans UA140 |
66.456 |
99.371 |
0.66 |