Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/comX2   Type   Regulator
Locus tag   ES276_RS00070 Genome accession   NZ_CP038252
Coordinates   15968..16441 (+) Length   157 a.a.
NCBI ID   WP_061633570.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901936     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10968..21441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES276_RS00055 (ES276_00055) hpt 11616..12158 (+) 543 WP_000892185.1 hypoxanthine phosphoribosyltransferase -
  ES276_RS00060 (ES276_00060) ftsH 12174..14132 (+) 1959 WP_000744538.1 ATP-dependent zinc metalloprotease FtsH -
  ES276_RS00065 (ES276_00065) - 14440..15786 (+) 1347 WP_001808790.1 IS1380-like element ISSpn5 family transposase -
  ES276_RS00070 (ES276_00075) comX/comX2 15968..16441 (+) 474 WP_061633570.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19655.22 Da        Isoelectric Point: 6.9734

>NTDB_id=310175 ES276_RS00070 WP_061633570.1 15968..16441(+) (comX/comX2) [Streptococcus pneumoniae strain TVO_1901936]
MIWDEEVQGTVYKCRNEYYLHLWELSDWEQEGMLCLHELISREEGLVDDIPRLRKYFKTKFRNRILDYIRKQESQKRRYD
KEPYEEVGEISHRISEGGLWLDDYYLFHETLRDYRNKQSKEKQEELERVLSNERFRGRQRVLRDLRIVFKEFTIRTH

Nucleotide


Download         Length: 474 bp        

>NTDB_id=310175 ES276_RS00070 WP_061633570.1 15968..16441(+) (comX/comX2) [Streptococcus pneumoniae strain TVO_1901936]
ATGATTTGGGATGAAGAAGTCCAAGGGACTGTGTATAAGTGTAGAAATGAATATTACCTTCATTTATGGGAATTGTCGGA
TTGGGAGCAAGAAGGCATGCTCTGCTTACATGAATTGATTAGTAGAGAAGAAGGACTGGTAGACGATATTCCACGTTTAA
GGAAATATTTCAAGACCAAGTTTCGAAATCGAATTTTAGACTATATCCGTAAACAGGAAAGTCAGAAGCGTAGATACGAT
AAAGAACCCTATGAAGAAGTGGGTGAGATCAGTCATCGTATAAGTGAGGGGGGTCTCTGGCTAGATGATTATTATCTCTT
TCATGAAACACTAAGAGATTATAGAAACAAACAAAGTAAAGAGAAACAAGAAGAACTAGAACGCGTCTTAAGCAATGAAC
GATTTCGAGGGCGTCAAAGAGTATTAAGAGACTTACGCATTGTGTTTAAGGAGTTTACTATCCGTACCCACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/comX2 Streptococcus pneumoniae TIGR4

100

97.452

0.975
  comX/comX1 Streptococcus pneumoniae TIGR4

100

97.452

0.975
  comX/comX2 Streptococcus pneumoniae Rx1

99.346

97.452

0.968
  comX/comX1 Streptococcus pneumoniae Rx1

99.346

97.452

0.968
  comX/comX2 Streptococcus pneumoniae D39

99.346

97.452

0.968
  comX/comX1 Streptococcus pneumoniae D39

99.346

97.452

0.968
  comX/comX2 Streptococcus pneumoniae R6

99.346

97.452

0.968
  comX/comX1 Streptococcus pneumoniae R6

99.346

97.452

0.968
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

92.157

97.452

0.898
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

92.157

97.452

0.898
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

90.789

96.815

0.879
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

89.404

96.178

0.86
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

49.669

96.178

0.478
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

49.669

96.178

0.478
  comX/sigX Streptococcus suis D9

47.26

92.994

0.439
  comX/sigX Streptococcus suis isolate S10

47.26

92.994

0.439
  comX/sigX Streptococcus suis P1/7

47.26

92.994

0.439
  comX/sigX Streptococcus mutans UA159

47.26

92.994

0.439
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40.268

94.904

0.382
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40.268

94.904

0.382
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

40.268

94.904

0.382
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

40.268

94.904

0.382
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40.268

94.904

0.382
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40.268

94.904

0.382
  comX Streptococcus salivarius SK126

38.514

94.268

0.363
  comX Streptococcus thermophilus LMG 18311

38.514

94.268

0.363
  comX Streptococcus thermophilus LMD-9

38.514

94.268

0.363