Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EWS90_RS09475 Genome accession   NZ_CP035739
Coordinates   1968908..1969237 (-) Length   109 a.a.
NCBI ID   WP_023116253.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 1334/14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1963908..1974237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWS90_RS09460 (EWS90_09460) uvrB 1965295..1967307 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  EWS90_RS09465 (EWS90_09465) - 1967495..1968691 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  EWS90_RS09475 (EWS90_09475) comEA/comE1 1968908..1969237 (-) 330 WP_023116253.1 ComEA family DNA-binding protein Machinery gene
  EWS90_RS09480 (EWS90_09480) - 1969428..1971425 (-) 1998 WP_023128731.1 polysaccharide biosynthesis protein -
  EWS90_RS09485 (EWS90_09485) - 1971460..1972479 (-) 1020 WP_003158833.1 MraY family glycosyltransferase -
  EWS90_RS09490 (EWS90_09490) - 1972481..1973437 (-) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11427.41 Da        Isoelectric Point: 8.0374

>NTDB_id=304478 EWS90_RS09475 WP_023116253.1 1968908..1969237(-) (comEA/comE1) [Pseudomonas aeruginosa strain 1334/14]
MHLIKSALLLILFACLPFSAYAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=304478 EWS90_RS09475 WP_023116253.1 1968908..1969237(-) (comEA/comE1) [Pseudomonas aeruginosa strain 1334/14]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTACGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment