Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DV427_RS05360 Genome accession   NZ_CP031240
Coordinates   1062765..1063457 (-) Length   230 a.a.
NCBI ID   WP_114891560.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1057765..1068457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS05330 - 1057847..1060018 (-) 2172 WP_114891556.1 heavy metal translocating P-type ATPase -
  DV427_RS05335 - 1060033..1060226 (-) 194 Protein_1003 cation transporter -
  DV427_RS05340 - 1060201..1060407 (-) 207 WP_114891558.1 heavy-metal-associated domain-containing protein -
  DV427_RS05345 - 1060484..1060870 (+) 387 WP_114891559.1 Cu(I)-responsive transcriptional regulator -
  DV427_RS05350 metJ 1060884..1061201 (-) 318 WP_005634287.1 met regulon transcriptional regulator MetJ -
  DV427_RS05355 rho 1061449..1062711 (+) 1263 WP_005629550.1 transcription termination factor Rho -
  DV427_RS05360 pilD 1062765..1063457 (-) 693 WP_114891560.1 prepilin peptidase Machinery gene
  DV427_RS05365 pilC 1063454..1064674 (-) 1221 WP_114891561.1 type II secretion system F family protein Machinery gene
  DV427_RS05370 pilB 1064671..1066065 (-) 1395 WP_114891562.1 GspE/PulE family protein Machinery gene
  DV427_RS05375 pilA 1066062..1066502 (-) 441 WP_114891563.1 prepilin peptidase-dependent pilin Machinery gene
  DV427_RS05380 ampD 1066617..1067171 (+) 555 WP_114891564.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DV427_RS05385 rppH 1067697..1068287 (+) 591 WP_005631202.1 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26515.52 Da        Isoelectric Point: 8.4147

>NTDB_id=304475 DV427_RS05360 WP_114891560.1 1062765..1063457(-) (pilD) [Haemophilus haemolyticus strain M19345]
MIYFAVFLLGGILGIALWFYLSGFITRLQQEIYATYVELFPQNCSPFQPHFASIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTIWIGLTLLILWAISYLDWDYQLISTTLCLWLLTLGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWLAKFYYS
KEAFGRGDYLLAMALGSFIHLETLPHFLLLASVLGICFSLIHRKKKEFLPFAPFMNLSAIIIYLVKYYGY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=304475 DV427_RS05360 WP_114891560.1 1062765..1063457(-) (pilD) [Haemophilus haemolyticus strain M19345]
ATGATTTACTTCGCAGTGTTTTTATTAGGCGGCATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACGCG
TTTGCAGCAAGAGATTTATGCAACTTACGTTGAATTATTCCCACAAAACTGTTCTCCATTTCAACCGCACTTTGCCTCTA
TTCAACAAAAGAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGAGTTGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTATATGGATCGGACTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGGATTATCA
ACTTATTTCTACTACACTCTGTTTATGGTTACTTACTCTCGGTTTATTTGGAGCAGACAATAACTTTTCATTGCTTACGT
TATCTGAAAGTATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGCTTGCAAAATTCTATTACAGC
AAAGAAGCCTTTGGACGAGGCGATTATTTGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAGGAAGAAAAAAGAATTTTTACCTTTTGCCCCTT
TTATGAACTTGTCGGCTATCATCATTTATCTCGTCAAATATTACGGATATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

92.609

100

0.926
  pilD Haemophilus influenzae 86-028NP

92.609

100

0.926

Multiple sequence alignment