Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SUB_RS07830 Genome accession   NC_012004
Coordinates   1555192..1557615 (+) Length   807 a.a.
NCBI ID   WP_015911871.1    Uniprot ID   B9DVL2
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1550192..1562615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS07805 (SUB1560) mutS/mutS2 1550245..1552578 (-) 2334 WP_015911866.1 endonuclease MutS2 Machinery gene
  SUB_RS07810 (SUB1561) - 1552647..1553192 (-) 546 WP_015911867.1 CvpA family protein -
  SUB_RS07815 (SUB1562) zapA 1553195..1553503 (-) 309 WP_015911868.1 cell division protein ZapA -
  SUB_RS07820 (SUB1563) rnhC 1553623..1554528 (+) 906 WP_015911869.1 ribonuclease HIII -
  SUB_RS07825 (SUB1564) lepB 1554543..1555136 (+) 594 WP_015911870.1 signal peptidase I -
  SUB_RS07830 (SUB1565) recD/recD2/recDB 1555192..1557615 (+) 2424 WP_015911871.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SUB_RS07835 (SUB1566) - 1557696..1558163 (+) 468 WP_015911872.1 hypothetical protein -
  SUB_RS07840 (SUB1567) dinB 1558187..1559281 (-) 1095 WP_015911873.1 DNA polymerase IV -
  SUB_RS07845 (SUB1568) pflB 1559489..1561816 (+) 2328 WP_015911874.1 formate C-acetyltransferase -
  SUB_RS07850 (SUB1569) - 1561873..1562319 (+) 447 WP_015911875.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 90751.12 Da        Isoelectric Point: 4.7112

>NTDB_id=29710 SUB_RS07830 WP_015911871.1 1555192..1557615(+) (recD/recD2/recDB) [Streptococcus uberis 0140J]
MEHYFTGTIDRIIYENASNFFKILLLSIEDTDSDIDDFEIIITGTMADVFEGEDYTFWGELTQHPKYGQQVKLTRYQKAK
PTSSGLIKYFSSDHFKGIGKKTAEKIVSLYGDNTIDKILEDPSQLETITGFSKANREAFLATLKLNYGTEQIISSLVELG
ISNRLAFLIYDCYKEEALETVKTNPYQLVEDIQGIGFKMADTLAFEIGIKSDAPERFRAALLHSLLEKSISQGDTYIEAR
DLLEYAINLLEDSRPIECQPAQVAEQLSQLIADSKIYHIGTKLFDATLYASEAGIHKHISRLLETPLSQPHSEESIDEEI
QSIEASFNMTYDRIQKEAIKLALSSKVFILTGGPGTGKTTVIRGILEAYSSLNKIDLEKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMDDYLDCDLIIIDEFSMVDTWLANQLLSSLPSSTQVIIVGDSDQLPSVGPGQVLADLL
KVPSIPKIALQKIFRQSEDSTIVDLANQMRLGHLPRDFKEKKADRSFFEAYAQHIPTMVTKIVTSAINSGIPKEEIQILA
PMYKGQAGINHLNQLMQDLLNPLGDGQEFLFNDIHLRRGDKILHLVNDAQLNVFNGDIGYIRDLIPAKYTESKQDEIIMD
FDGTEVTYPRNEWLKITLAYAMSIHKSQGSEFQVVILPITHQGGRLLQRNLIYTAVTRSKSKLILLGEYSAFHYAIQKEG
DKRQTYLVQRFADSSLTETLDNDSGDDHLQNAQLSPQKITNDVQYLPIKDSGPQEEEAYRLTLENMLSIDPMIGLKEEDI
LIFFNKN

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=29710 SUB_RS07830 WP_015911871.1 1555192..1557615(+) (recD/recD2/recDB) [Streptococcus uberis 0140J]
ATGGAGCACTATTTCACTGGAACAATCGACCGCATTATCTACGAGAACGCCAGTAATTTTTTTAAAATCCTTCTCTTATC
TATTGAAGATACGGACAGTGACATTGATGATTTTGAAATTATTATCACTGGTACAATGGCTGATGTTTTTGAAGGAGAAG
ATTACACGTTTTGGGGCGAATTAACTCAACACCCTAAATACGGCCAACAAGTAAAATTAACCAGATACCAAAAAGCAAAA
CCGACGTCGTCTGGCCTAATTAAGTACTTTTCCAGTGACCATTTTAAAGGGATTGGAAAAAAGACAGCAGAAAAAATTGT
CTCTTTATACGGAGACAACACCATTGATAAAATTCTAGAAGACCCTAGTCAATTAGAGACCATAACAGGATTTTCGAAGG
CCAATAGAGAAGCCTTTCTGGCAACATTAAAGCTAAATTACGGAACGGAACAAATTATTTCATCCCTTGTTGAACTTGGC
ATTTCAAATCGTCTTGCCTTCTTAATCTATGATTGCTACAAGGAAGAAGCCTTAGAAACTGTCAAAACCAACCCCTATCA
ACTTGTAGAAGACATTCAAGGAATTGGCTTTAAAATGGCTGATACACTTGCCTTTGAAATTGGAATCAAAAGTGATGCTC
CCGAACGCTTCCGTGCAGCACTCTTACATTCACTTTTAGAAAAATCCATCAGTCAAGGAGATACTTATATAGAAGCGCGT
GATCTCCTAGAATATGCCATTAATCTCTTAGAAGATTCGAGACCAATTGAATGTCAACCCGCCCAAGTGGCTGAACAATT
AAGTCAATTGATTGCTGATTCAAAAATTTATCATATTGGAACAAAACTCTTTGATGCCACCCTTTACGCATCTGAAGCAG
GCATTCATAAGCATATTTCACGTCTTTTAGAAACCCCATTATCGCAGCCTCATTCTGAGGAATCCATTGATGAAGAAATC
CAGTCAATAGAAGCTTCTTTCAATATGACTTATGATAGGATTCAAAAAGAAGCCATAAAACTAGCACTTTCCAGTAAAGT
TTTTATCTTAACAGGAGGACCCGGTACTGGAAAAACAACTGTGATTAGAGGTATTCTCGAGGCCTATTCCTCCTTAAACA
AGATTGATCTTGAAAAAAAAGATCTTCCAATCCTCTTAGCTGCGCCAACTGGCAGAGCAGCTAGACGAATGAATGAGTTG
ACTGGTTTACCTAGCGCCACCATTCACCGACATTTGGGCCTAAACGGGGATAACGATTACCAAGCAATGGATGATTATTT
AGACTGTGATTTAATCATTATCGATGAATTTTCCATGGTTGATACTTGGCTTGCCAACCAACTCCTAAGCTCTTTACCAT
CAAGCACACAAGTTATCATTGTGGGCGACAGTGACCAACTTCCCTCTGTCGGACCAGGACAAGTACTAGCCGATTTGCTA
AAAGTTCCAAGCATTCCAAAAATTGCCCTTCAAAAGATTTTTAGGCAATCCGAAGATTCTACCATTGTCGATTTAGCCAA
TCAAATGAGACTGGGACATTTGCCAAGGGACTTTAAAGAAAAAAAAGCCGATCGCTCATTTTTTGAAGCTTACGCCCAAC
ATATTCCAACAATGGTGACAAAAATAGTAACTTCTGCTATAAATAGCGGAATTCCAAAAGAAGAAATTCAAATTTTGGCA
CCCATGTACAAAGGCCAAGCCGGAATTAACCATTTAAATCAATTAATGCAAGATCTCCTTAACCCACTTGGTGATGGACA
AGAGTTTCTCTTTAACGATATACATTTAAGGAGGGGAGATAAGATTCTCCACTTGGTCAATGATGCCCAATTAAATGTTT
TTAATGGCGATATTGGATATATTAGAGACTTGATTCCAGCAAAATACACTGAATCAAAACAAGATGAAATTATCATGGAC
TTTGATGGAACTGAAGTTACTTACCCAAGAAATGAATGGCTGAAAATCACCCTTGCTTATGCCATGAGTATCCATAAATC
ACAAGGAAGTGAATTTCAAGTGGTTATTTTACCAATCACGCATCAAGGGGGGCGGCTGTTACAACGCAATCTTATCTATA
CAGCTGTCACGCGCTCCAAGAGCAAACTTATCCTACTTGGAGAATATTCAGCCTTTCATTATGCTATCCAAAAAGAAGGA
GATAAGCGTCAAACTTATTTGGTGCAACGCTTTGCTGATAGCTCACTAACAGAAACTCTAGATAATGACTCAGGTGACGA
CCACCTTCAAAATGCTCAGCTTTCGCCTCAAAAAATTACGAATGACGTCCAATACCTACCAATCAAGGACTCAGGTCCTC
AAGAAGAAGAGGCCTATCGCTTGACCCTCGAAAATATGTTAAGCATTGATCCTATGATTGGTCTCAAAGAAGAGGACATT
CTCATCTTTTTTAATAAAAATTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)

AAA domain (AAA_30)

(331-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DVL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.161

93.309

0.403

Multiple sequence alignment