Detailed information NTG0027071

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SGO_RS06250
• Genome accession: NC_009785
• Coordinates: 1317036..1318148 (-)
• Length: 370 a.a.
• NCBI ID: WP_012000665.1
• Uniprot ID: A8AXP5
• Organism: Streptococcus gordonii str. Challis substr. CH1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1312036..1323148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGO_RS06220 (SGO_1266)	mnmE	1312265..1313638 (+)	1374	WP_012000661.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	-
SGO_RS06225 (SGO_1267)	-	1313789..1314358 (-)	570	WP_041789701.1	TlpA family protein disulfide reductase	-
SGO_RS06230 (SGO_1268)	-	1314798..1315496 (-)	699	WP_012000663.1	LrgB family protein	-
SGO_RS06235 (SGO_1269)	-	1315489..1315869 (-)	381	WP_008809214.1	CidA/LrgA family protein	-
SGO_RS06245 (SGO_1272)	-	1316645..1316983 (-)	339	WP_012000664.1	metal-sulfur cluster assembly factor	-
SGO_RS06250 (SGO_1273)	rpoS	1317036..1318148 (-)	1113	WP_012000665.1	RNA polymerase sigma factor RpoD	Regulator
SGO_RS06255 (SGO_1274)	dnaG	1318151..1319932 (-)	1782	WP_012000666.1	DNA primase	-
SGO_RS06260 (SGO_1275)	mscL	1320138..1320518 (+)	381	WP_012000667.1	large conductance mechanosensitive channel protein MscL	-
SGO_RS06265 (SGO_1276)	rpsU	1320626..1320802 (-)	177	WP_000048054.1	30S ribosomal protein S21	-
SGO_RS06270 (SGO_1277)	-	1320929..1321612 (-)	684	WP_012000668.1	DUF4956 domain-containing protein	-
SGO_RS06275	-	1321623..1322354 (-)	732	Protein_1241	polyphosphate polymerase domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42403.10 Da
• Isoelectric Point: 4.5140

>NTDB_id=27071 SGO_RS06250 WP_012000665.1 1317036..1318148(-) (rpoS) [Streptococcus gordonii str. Challis substr. CH1]
MATKQKEVTTFDVQVAEFIRNHKKAGTVIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=27071 SGO_RS06250 WP_012000665.1 1317036..1318148(-) (rpoS) [Streptococcus gordonii str. Challis substr. CH1]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAGGCTGGTAC
GGTAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATTTGTTGCAAC
GTATTCAAGATGCAGGGATTTCTATTACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTAACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTATCTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTAGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCTAAACGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCCGTTGACAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACGTA
TGCAACTTGGTGGATCCGTCAGGCCATTACCCGTGCGATTGCTGACCAAGCTAGAACAATCCGAATCCCAGTTCACATGG
TAGAAACGATTAATAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTAGGCCAAGATCCAACGCCTGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTCAAGATTGCCCAGGAGCCAGTTTCTCTGGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTACACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACTCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTTTTCAATGTGACACGTGAACGCATTCGCCAAAT
TGAAGCTAAAGCTCTACGTAAACTACGCCACCCAAGCCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

3D structure

• AlphaFold DB: A8AXP5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.918	78.919	0.37