Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | C3K08_RS12515 | Genome accession | NZ_CP026516 |
| Coordinates | 2493878..2495110 (-) | Length | 410 a.a. |
| NCBI ID | WP_104991597.1 | Uniprot ID | - |
| Organism | Deinococcus sp. NW-56 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2488878..2500110
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3K08_RS12500 | - | 2490661..2491824 (-) | 1164 | WP_104991594.1 | nitric oxide synthase oxygenase | - |
| C3K08_RS12505 | - | 2491996..2492421 (-) | 426 | WP_104991595.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| C3K08_RS12510 | - | 2492488..2493867 (+) | 1380 | WP_104991596.1 | DUF4403 family protein | - |
| C3K08_RS12515 | pilT | 2493878..2495110 (-) | 1233 | WP_104991597.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| C3K08_RS12520 | pilB | 2495157..2497826 (-) | 2670 | WP_104991598.1 | type II/IV secretion system protein | Machinery gene |
| C3K08_RS12525 | - | 2497856..2498356 (-) | 501 | WP_104991599.1 | YqeG family HAD IIIA-type phosphatase | - |
| C3K08_RS12530 | pgeF | 2498353..2499120 (-) | 768 | WP_104991600.1 | peptidoglycan editing factor PgeF | - |
| C3K08_RS17960 | - | 2499169..2499354 (-) | 186 | WP_158679927.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 44396.78 Da Isoelectric Point: 8.4062
>NTDB_id=270060 C3K08_RS12515 WP_104991597.1 2493878..2495110(-) (pilT) [Deinococcus sp. NW-56]
MTLAAPDITDILRFAAEKGASDIILTVGLPPQFKLSGNYEVQQGMAPLAATETRKLMYSMMNERQQRTFEEKRELDFSFA
LGEKARFRVNAFMQRGFVGGVMRLIPTTIRSAAEMGLPQNITDIANAPRGLVLVTGPTGSGKSTTLAAMIDHINVTKKLH
IVTIEDPIEFMHSHKQSIVNQREIGSDTMSFADALRASLRQAPDVILVGEMRDYETIRAAVTAAETGHLVMGTLHTNSAP
ESIDRIVDVFPEEQQEQIRVQLANNLVAVMTQQLLPRADGPGRVLAYELLIANPAVRALIREGKTFQIVSTMQTGAREGM
VTMDAFLANLYRRRVISYETGVARAVDPKEFARLANDPNAGVGGATYTPPTAPAAPAPAQPAGAALGRTATGTSTTTTQS
GTTQTQFGRR
MTLAAPDITDILRFAAEKGASDIILTVGLPPQFKLSGNYEVQQGMAPLAATETRKLMYSMMNERQQRTFEEKRELDFSFA
LGEKARFRVNAFMQRGFVGGVMRLIPTTIRSAAEMGLPQNITDIANAPRGLVLVTGPTGSGKSTTLAAMIDHINVTKKLH
IVTIEDPIEFMHSHKQSIVNQREIGSDTMSFADALRASLRQAPDVILVGEMRDYETIRAAVTAAETGHLVMGTLHTNSAP
ESIDRIVDVFPEEQQEQIRVQLANNLVAVMTQQLLPRADGPGRVLAYELLIANPAVRALIREGKTFQIVSTMQTGAREGM
VTMDAFLANLYRRRVISYETGVARAVDPKEFARLANDPNAGVGGATYTPPTAPAAPAPAQPAGAALGRTATGTSTTTTQS
GTTQTQFGRR
Nucleotide
Download Length: 1233 bp
>NTDB_id=270060 C3K08_RS12515 WP_104991597.1 2493878..2495110(-) (pilT) [Deinococcus sp. NW-56]
ATGACCCTAGCTGCCCCCGACATCACCGACATCCTGCGTTTCGCCGCCGAGAAGGGCGCGTCCGACATCATCCTGACGGT
GGGCCTGCCCCCGCAGTTCAAGCTCAGCGGCAACTACGAGGTGCAGCAGGGGATGGCCCCGCTCGCCGCGACCGAGACCC
GCAAGCTGATGTACTCGATGATGAACGAGCGCCAGCAGCGCACCTTCGAGGAAAAGCGCGAGCTGGACTTCTCGTTCGCC
CTGGGGGAAAAAGCCCGCTTCCGCGTGAACGCCTTTATGCAGCGCGGATTCGTGGGCGGGGTCATGCGCCTGATTCCCAC
CACCATTCGCAGCGCCGCCGAGATGGGATTGCCGCAGAACATCACCGACATCGCCAACGCGCCGCGCGGGCTGGTCCTCG
TGACCGGGCCGACCGGCTCGGGCAAGTCGACCACCCTCGCCGCGATGATCGACCACATCAACGTCACCAAGAAGCTGCAC
ATCGTGACCATCGAGGACCCCATCGAGTTCATGCACTCGCACAAGCAGAGCATCGTGAACCAGCGCGAGATCGGGTCGGA
CACCATGAGCTTCGCGGACGCGCTGCGGGCCTCGCTGCGGCAGGCCCCCGATGTGATTCTGGTGGGCGAGATGCGCGACT
ACGAGACCATCCGCGCCGCCGTGACCGCCGCCGAAACCGGGCACCTCGTGATGGGCACCCTGCACACCAACTCGGCGCCC
GAATCCATCGACCGCATCGTGGACGTGTTCCCCGAAGAGCAGCAGGAGCAGATCCGGGTGCAGCTCGCCAACAACCTCGT
CGCCGTGATGACCCAGCAGCTTCTGCCCCGTGCGGACGGGCCGGGGCGGGTGCTCGCCTACGAACTGCTGATCGCCAACC
CGGCCGTCCGGGCGCTGATCCGCGAGGGCAAGACCTTCCAGATCGTCTCCACCATGCAGACCGGGGCGCGGGAGGGCATG
GTCACGATGGACGCCTTCCTGGCCAACCTCTACCGCCGCCGGGTCATCTCCTACGAGACGGGCGTGGCCCGCGCGGTGGA
CCCCAAGGAATTCGCCCGCCTCGCCAACGACCCCAACGCGGGGGTGGGCGGCGCGACCTACACGCCGCCGACGGCTCCAG
CGGCGCCTGCCCCCGCCCAGCCCGCAGGCGCGGCGCTCGGGCGCACGGCGACGGGGACGAGTACGACCACGACCCAGTCG
GGCACGACCCAGACGCAGTTCGGGCGGCGCTGA
ATGACCCTAGCTGCCCCCGACATCACCGACATCCTGCGTTTCGCCGCCGAGAAGGGCGCGTCCGACATCATCCTGACGGT
GGGCCTGCCCCCGCAGTTCAAGCTCAGCGGCAACTACGAGGTGCAGCAGGGGATGGCCCCGCTCGCCGCGACCGAGACCC
GCAAGCTGATGTACTCGATGATGAACGAGCGCCAGCAGCGCACCTTCGAGGAAAAGCGCGAGCTGGACTTCTCGTTCGCC
CTGGGGGAAAAAGCCCGCTTCCGCGTGAACGCCTTTATGCAGCGCGGATTCGTGGGCGGGGTCATGCGCCTGATTCCCAC
CACCATTCGCAGCGCCGCCGAGATGGGATTGCCGCAGAACATCACCGACATCGCCAACGCGCCGCGCGGGCTGGTCCTCG
TGACCGGGCCGACCGGCTCGGGCAAGTCGACCACCCTCGCCGCGATGATCGACCACATCAACGTCACCAAGAAGCTGCAC
ATCGTGACCATCGAGGACCCCATCGAGTTCATGCACTCGCACAAGCAGAGCATCGTGAACCAGCGCGAGATCGGGTCGGA
CACCATGAGCTTCGCGGACGCGCTGCGGGCCTCGCTGCGGCAGGCCCCCGATGTGATTCTGGTGGGCGAGATGCGCGACT
ACGAGACCATCCGCGCCGCCGTGACCGCCGCCGAAACCGGGCACCTCGTGATGGGCACCCTGCACACCAACTCGGCGCCC
GAATCCATCGACCGCATCGTGGACGTGTTCCCCGAAGAGCAGCAGGAGCAGATCCGGGTGCAGCTCGCCAACAACCTCGT
CGCCGTGATGACCCAGCAGCTTCTGCCCCGTGCGGACGGGCCGGGGCGGGTGCTCGCCTACGAACTGCTGATCGCCAACC
CGGCCGTCCGGGCGCTGATCCGCGAGGGCAAGACCTTCCAGATCGTCTCCACCATGCAGACCGGGGCGCGGGAGGGCATG
GTCACGATGGACGCCTTCCTGGCCAACCTCTACCGCCGCCGGGTCATCTCCTACGAGACGGGCGTGGCCCGCGCGGTGGA
CCCCAAGGAATTCGCCCGCCTCGCCAACGACCCCAACGCGGGGGTGGGCGGCGCGACCTACACGCCGCCGACGGCTCCAG
CGGCGCCTGCCCCCGCCCAGCCCGCAGGCGCGGCGCTCGGGCGCACGGCGACGGGGACGAGTACGACCACGACCCAGTCG
GGCACGACCCAGACGCAGTTCGGGCGGCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
82.199 |
93.171 |
0.766 |
| pilT | Acinetobacter nosocomialis M2 |
52.023 |
84.39 |
0.439 |
| pilT | Acinetobacter baumannii D1279779 |
52.023 |
84.39 |
0.439 |
| pilT | Acinetobacter baumannii strain A118 |
52.023 |
84.39 |
0.439 |
| pilT | Neisseria meningitidis 8013 |
52.023 |
84.39 |
0.439 |
| pilT | Acinetobacter baylyi ADP1 |
51.734 |
84.39 |
0.437 |
| pilT | Neisseria gonorrhoeae MS11 |
51.304 |
84.146 |
0.432 |
| pilT | Pseudomonas aeruginosa PAK |
51.014 |
84.146 |
0.429 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50.725 |
84.146 |
0.427 |
| pilT | Legionella pneumophila strain Lp02 |
48.986 |
84.146 |
0.412 |
| pilT | Legionella pneumophila strain ERS1305867 |
48.986 |
84.146 |
0.412 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.151 |
80.732 |
0.405 |
| pilT | Vibrio cholerae strain A1552 |
50.151 |
80.732 |
0.405 |
| pilU | Pseudomonas stutzeri DSM 10701 |
44.776 |
81.707 |
0.366 |