Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   STU_RS16225 Genome accession   NC_006448
Coordinates   1294403..1295089 (-) Length   228 a.a.
NCBI ID   WP_011226324.1    Uniprot ID   Q5M3F9
Organism   Streptococcus thermophilus LMG 18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1289403..1300089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STU_RS16195 (stu1458) - 1289482..1290057 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  STU_RS16200 (stu1460) - 1290422..1291393 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  STU_RS16205 (stu1461) - 1291397..1292509 (+) 1113 WP_002948029.1 cysteine desulfurase family protein -
  STU_RS16210 (stu1462) - 1292511..1292858 (+) 348 WP_011226321.1 DUF1831 domain-containing protein -
  STU_RS16215 (stu1463) - 1293003..1293662 (+) 660 WP_041828288.1 redox-sensing transcriptional repressor Rex -
  STU_RS16220 (stu1464) - 1293655..1294350 (+) 696 WP_011226323.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  STU_RS16225 (stu1465) radC 1294403..1295089 (-) 687 WP_011226324.1 RadC family protein Machinery gene
  STU_RS16230 (stu1467) - 1295138..1296922 (-) 1785 WP_011226325.1 rhamnan synthesis F family protein -
  STU_RS16235 (stu1468) - 1296919..1297974 (-) 1056 WP_002948022.1 glycosyltransferase family 2 protein -
  STU_RS16240 (stu1469) - 1297994..1299199 (-) 1206 WP_011226326.1 ABC transporter ATP-binding protein -
  STU_RS16245 (stu1470) - 1299199..1300008 (-) 810 WP_002948020.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25845.89 Da        Isoelectric Point: 6.6449

>NTDB_id=24291 STU_RS16225 WP_011226324.1 1294403..1295089(-) (radC) [Streptococcus thermophilus LMG 18311]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILY
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=24291 STU_RS16225 WP_011226324.1 1294403..1295089(-) (radC) [Streptococcus thermophilus LMG 18311]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAAAAGGGTGCAGAGGTCTTGTCTGA
CCAGGAACTGTTGGCGATAGTGCTGCGAACGGGGACTAGGTCTGAGTCGGTTCTATCCATGGCCAATCGTATTTTGAAAG
GGATGACGAGTTTGGCGGATTTGTCTCGCTTGTCTCTGAATGAGCTTCAGGAGATTCCTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCTGAGCAGATTATGTCTAG
TCAGCAGGTGGCACGTCGCATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAATCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGTAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTGATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.929

98.246

0.579
  radC Streptococcus pneumoniae R6

58.482

98.246

0.575
  radC Streptococcus pneumoniae D39

58.482

98.246

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

57.207

97.368

0.557
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.642

92.982

0.443

Multiple sequence alignment