Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SCH_RS15860 Genome accession   NC_006905
Coordinates   3219437..3220417 (-) Length   326 a.a.
NCBI ID   WP_011264385.1    Uniprot ID   Q57K17
Organism   Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3214437..3225417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCH_RS15830 (SC3033) endA 3214895..3215602 (+) 708 WP_000286133.1 deoxyribonuclease I -
  SCH_RS15835 (SC3034) rsmE 3215679..3216410 (+) 732 WP_011264384.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SCH_RS15840 (SC3035) gshB 3216430..3217377 (+) 948 WP_001540887.1 glutathione synthase -
  SCH_RS15845 (SC3036) - 3217593..3218156 (+) 564 WP_001053171.1 YqgE/AlgH family protein -
  SCH_RS15850 (SC3037) ruvX 3218156..3218572 (+) 417 WP_001285491.1 Holliday junction resolvase RuvX -
  SCH_RS15855 (SC3038) - 3218619..3219305 (-) 687 WP_024131364.1 IclR family transcriptional regulator domain-containing protein -
  SCH_RS15860 (SC3039) pilT 3219437..3220417 (-) 981 WP_011264385.1 type IV pilus twitching motility protein PilT Machinery gene
  SCH_RS15865 (SC3040) - 3220435..3221139 (+) 705 WP_000997812.1 YggS family pyridoxal phosphate-dependent enzyme -
  SCH_RS15870 (SC3041) - 3221158..3221724 (+) 567 WP_001094848.1 YggT family protein -
  SCH_RS15875 (SC3042) yggU 3221721..3222011 (+) 291 WP_001277204.1 DUF167 family protein YggU -
  SCH_RS15880 (SC3043) - 3222019..3222612 (+) 594 WP_011264386.1 XTP/dITP diphosphatase -
  SCH_RS15885 (SC3044) hemW 3222605..3223741 (+) 1137 WP_001096537.1 radical SAM family heme chaperone HemW -
  SCH_RS15890 (SC3045) - 3223833..3224840 (-) 1008 WP_000252192.1 DUF1202 domain-containing protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36101.31 Da        Isoelectric Point: 7.2486

>NTDB_id=24291 SCH_RS15860 WP_011264385.1 3219437..3220417(-) (pilT) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]
MNMEEIVTLSVKHNVSDLHLCNAWPARWCKQGRMETAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTLPIVPALLASENGLILVTGATGCGKSTTLAAMVGYLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=24291 SCH_RS15860 WP_011264385.1 3219437..3220417(-) (pilT) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGTGCAAACAAGGACGCATGGAGACAGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCTGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAAT
CCACCACGCTGGCGGCGATGGTGGGATATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCAGCGTTGCGTGAAGATCCCGATGTCATTTTGCTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGCCAACTGGCGGGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGACTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(75-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q57K17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.318

100

0.485
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.318

100

0.485
  pilT Neisseria meningitidis 8013

46.951

100

0.472
  pilT Neisseria gonorrhoeae MS11

46.646

100

0.469
  pilT Acinetobacter baylyi ADP1

45.26

100

0.454
  pilT Acinetobacter baumannii strain A118

44.954

100

0.451
  pilT Acinetobacter baumannii D1279779

44.954

100

0.451
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Pseudomonas stutzeri DSM 10701

44.954

100

0.451
  pilT Acinetobacter nosocomialis M2

44.648

100

0.448
  pilT Legionella pneumophila strain Lp02

44.34

97.546

0.433
  pilT Legionella pneumophila strain ERS1305867

44.34

97.546

0.433
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.509

97.546

0.405
  pilU Vibrio cholerae strain A1552

38.245

97.853

0.374
  pilU Pseudomonas stutzeri DSM 10701

35.65

100

0.362

Multiple sequence alignment