Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | DP_RS08615 | Genome accession | NC_006138 |
| Coordinates | 1898606..1899688 (+) | Length | 360 a.a. |
| NCBI ID | WP_011188935.1 | Uniprot ID | Q6AMK2 |
| Organism | Desulfotalea psychrophila LSv54 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1893606..1904688
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DP_RS08600 (DP1691) | selA | 1894409..1895809 (+) | 1401 | WP_011188932.1 | L-seryl-tRNA(Sec) selenium transferase | - |
| DP_RS08605 (DP1692) | - | 1895810..1897825 (+) | 2016 | WP_011188933.1 | tetratricopeptide repeat protein | - |
| DP_RS08610 (DP1693) | - | 1897944..1898549 (+) | 606 | WP_049785045.1 | TIGR00730 family Rossman fold protein | - |
| DP_RS08615 (DP1694) | pilT | 1898606..1899688 (+) | 1083 | WP_011188935.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| DP_RS08620 (DP1695) | - | 1899707..1900747 (-) | 1041 | WP_011188936.1 | hypothetical protein | - |
| DP_RS08625 (DP1696) | - | 1900857..1902257 (-) | 1401 | WP_011188937.1 | efflux transporter outer membrane subunit | - |
Sequence
Protein
Download Length: 360 a.a. Molecular weight: 40285.71 Da Isoelectric Point: 7.1304
>NTDB_id=23489 DP_RS08615 WP_011188935.1 1898606..1899688(+) (pilT) [Desulfotalea psychrophila LSv54]
MAQIDGFFKLMNDEGASDLHMVANQQPVLRIRGDMERVKFKKLGNDELRAMLYEICPEEKIKLFEETGDIDFGYEIPGLA
RYRCNYFQQKYGVGAVFREIPSEIKTCAELGLPDIICRLAHLPKGLVLITGPTGSGKSTTLAAIIDEANKVRKDHILTIE
DPIEFVHRSQRCVVNHREVGTHTDSFATALRGALREDPDIIMVGELRDLETIKLAMEAAMTGHLVFGTLHTINAMKTVDR
IIEIFPASEQGQVRSTLADSLRAVVSQTLFKRTDVKGRCAALEILIATPAVRNLIREAKTFQIISSMQTGKKFGMRTLDD
SIMTLLEKKMISAEDAYSNAGDKSKFVKFLRKPPSDFTEM
MAQIDGFFKLMNDEGASDLHMVANQQPVLRIRGDMERVKFKKLGNDELRAMLYEICPEEKIKLFEETGDIDFGYEIPGLA
RYRCNYFQQKYGVGAVFREIPSEIKTCAELGLPDIICRLAHLPKGLVLITGPTGSGKSTTLAAIIDEANKVRKDHILTIE
DPIEFVHRSQRCVVNHREVGTHTDSFATALRGALREDPDIIMVGELRDLETIKLAMEAAMTGHLVFGTLHTINAMKTVDR
IIEIFPASEQGQVRSTLADSLRAVVSQTLFKRTDVKGRCAALEILIATPAVRNLIREAKTFQIISSMQTGKKFGMRTLDD
SIMTLLEKKMISAEDAYSNAGDKSKFVKFLRKPPSDFTEM
Nucleotide
Download Length: 1083 bp
>NTDB_id=23489 DP_RS08615 WP_011188935.1 1898606..1899688(+) (pilT) [Desulfotalea psychrophila LSv54]
ATGGCGCAAATAGACGGTTTTTTTAAATTGATGAATGATGAAGGCGCTTCGGATTTACATATGGTTGCAAATCAGCAGCC
CGTGTTGCGTATCCGTGGTGACATGGAGCGGGTAAAATTTAAAAAACTGGGAAATGACGAATTGCGGGCAATGCTCTATG
AAATTTGCCCGGAAGAGAAAATCAAGTTATTTGAAGAGACGGGAGATATTGATTTTGGTTATGAAATCCCTGGACTTGCT
CGTTACAGATGCAATTATTTCCAACAAAAATATGGTGTCGGAGCTGTCTTTCGTGAAATTCCCAGTGAGATTAAGACCTG
TGCTGAATTGGGGCTTCCTGATATAATTTGTCGACTTGCCCATCTGCCCAAGGGGCTTGTCCTGATTACCGGGCCTACTG
GTTCTGGTAAGTCGACGACTCTGGCTGCTATCATTGATGAGGCAAATAAGGTCCGTAAGGATCATATTCTTACCATTGAA
GATCCGATAGAGTTTGTTCATCGCAGTCAGAGATGTGTGGTTAATCACCGGGAGGTGGGAACGCACACAGACAGCTTCGC
CACAGCCCTTCGTGGCGCCCTGCGTGAAGATCCCGATATTATCATGGTAGGTGAGCTGCGTGATCTGGAAACGATCAAAC
TTGCCATGGAGGCAGCGATGACAGGTCACCTGGTTTTTGGCACCCTGCATACCATTAATGCCATGAAGACCGTTGACAGA
ATTATTGAAATTTTTCCGGCAAGTGAGCAGGGTCAGGTACGTTCCACCCTTGCTGATTCGTTACGGGCAGTTGTCTCCCA
AACGCTTTTTAAGCGAACCGATGTGAAGGGGCGTTGTGCAGCCCTGGAGATTTTGATTGCAACCCCGGCAGTCCGTAACC
TTATTCGTGAGGCAAAGACATTTCAAATTATCTCTTCTATGCAGACAGGGAAGAAATTTGGTATGAGAACCCTCGATGAT
TCGATCATGACCCTTTTAGAAAAGAAGATGATCAGTGCAGAAGATGCATATTCAAATGCCGGTGATAAGAGTAAATTTGT
TAAATTTCTGCGTAAACCGCCCAGTGATTTCACCGAAATGTAA
ATGGCGCAAATAGACGGTTTTTTTAAATTGATGAATGATGAAGGCGCTTCGGATTTACATATGGTTGCAAATCAGCAGCC
CGTGTTGCGTATCCGTGGTGACATGGAGCGGGTAAAATTTAAAAAACTGGGAAATGACGAATTGCGGGCAATGCTCTATG
AAATTTGCCCGGAAGAGAAAATCAAGTTATTTGAAGAGACGGGAGATATTGATTTTGGTTATGAAATCCCTGGACTTGCT
CGTTACAGATGCAATTATTTCCAACAAAAATATGGTGTCGGAGCTGTCTTTCGTGAAATTCCCAGTGAGATTAAGACCTG
TGCTGAATTGGGGCTTCCTGATATAATTTGTCGACTTGCCCATCTGCCCAAGGGGCTTGTCCTGATTACCGGGCCTACTG
GTTCTGGTAAGTCGACGACTCTGGCTGCTATCATTGATGAGGCAAATAAGGTCCGTAAGGATCATATTCTTACCATTGAA
GATCCGATAGAGTTTGTTCATCGCAGTCAGAGATGTGTGGTTAATCACCGGGAGGTGGGAACGCACACAGACAGCTTCGC
CACAGCCCTTCGTGGCGCCCTGCGTGAAGATCCCGATATTATCATGGTAGGTGAGCTGCGTGATCTGGAAACGATCAAAC
TTGCCATGGAGGCAGCGATGACAGGTCACCTGGTTTTTGGCACCCTGCATACCATTAATGCCATGAAGACCGTTGACAGA
ATTATTGAAATTTTTCCGGCAAGTGAGCAGGGTCAGGTACGTTCCACCCTTGCTGATTCGTTACGGGCAGTTGTCTCCCA
AACGCTTTTTAAGCGAACCGATGTGAAGGGGCGTTGTGCAGCCCTGGAGATTTTGATTGCAACCCCGGCAGTCCGTAACC
TTATTCGTGAGGCAAAGACATTTCAAATTATCTCTTCTATGCAGACAGGGAAGAAATTTGGTATGAGAACCCTCGATGAT
TCGATCATGACCCTTTTAGAAAAGAAGATGATCAGTGCAGAAGATGCATATTCAAATGCCGGTGATAAGAGTAAATTTGT
TAAATTTCTGCGTAAACCGCCCAGTGATTTCACCGAAATGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Legionella pneumophila strain Lp02 |
54.985 |
91.944 |
0.506 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.985 |
91.944 |
0.506 |
| pilT | Pseudomonas aeruginosa PAK |
54.054 |
92.5 |
0.5 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.453 |
92.5 |
0.494 |
| pilT | Acinetobacter baylyi ADP1 |
53.474 |
91.944 |
0.492 |
| pilT | Acinetobacter baumannii D1279779 |
51.952 |
92.5 |
0.481 |
| pilT | Acinetobacter baumannii strain A118 |
51.952 |
92.5 |
0.481 |
| pilT | Acinetobacter nosocomialis M2 |
51.952 |
92.5 |
0.481 |
| pilT | Neisseria meningitidis 8013 |
50.44 |
94.722 |
0.478 |
| pilT | Neisseria gonorrhoeae MS11 |
50.147 |
94.722 |
0.475 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.688 |
96.111 |
0.458 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.846 |
90.278 |
0.45 |
| pilT | Vibrio cholerae strain A1552 |
49.846 |
90.278 |
0.45 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.701 |
98.333 |
0.381 |
| pilU | Acinetobacter baylyi ADP1 |
38.576 |
93.611 |
0.361 |