Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   SPG_0244 Genome accession   CP001015
Coordinates   229193..230191 (+) Length   332 a.a.
NCBI ID   ACF55795.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 224193..235191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_0241 leuS 224334..226835 (+) 2502 ACF55084.1 leucyl-tRNA synthetase -
  SPG_0242 - 227029..227724 (+) 696 ACF56867.1 acetyltransferase, GNAT family -
  SPG_0243 - 227736..228152 (+) 417 ACF56153.1 acetyltransferase, GNAT family -
  SPG_0244 ruvB 229193..230191 (+) 999 ACF55795.1 Holliday junction DNA helicase RuvB Machinery gene
  SPG_0245 - 230172..230744 (+) 573 ACF55033.1 conserved hypothetical protein -
  SPG_0246 - 230975..231733 (+) 759 ACF55341.1 undecaprenyl pyrophosphate synthetase -
  SPG_0247 cdsA 231742..232545 (+) 804 ACF54884.1 phosphatidate cytidylyltransferase -
  SPG_0248 eeP 232567..233826 (+) 1260 ACF56561.1 peptidase, M50 family Regulator

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37306.76 Da        Isoelectric Point: 4.5053

>NTDB_id=20323 SPG_0244 ACF55795.1 229193..230191(+) (ruvB) [Streptococcus pneumoniae G54]
MSRILDNEMMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNELEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DIITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=20323 SPG_0244 ACF55795.1 229193..230191(+) (ruvB) [Streptococcus pneumoniae G54]
ATGAGTAGAATTTTAGATAATGAGATGATGGGTGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATTGGTCAGGATAAGGTTAAGGATCAGCTTCAGATCTTTATCGAAGCCGCTAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGCCCTCCAGGGCTTGGGAAAACAACCATGGCTTTTGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCTGGTCCTGTTATCGAAAAAGCGGGTGATTTGGTAGCGATTTTGAATGAGTTAGAGCCTGGAGATGTCCT
CTTTATTGACGAGATTCATCGCTTACCCATGTCAGTGGAAGAAGTGCTTTATAGTGCCATGGAGGACTTCTACATCGATA
TTATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCTCCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCCCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACTCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTAATCGAT
GATATTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
TACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGATATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae R6

99.699

100

0.997
  ruvB Streptococcus pneumoniae D39

99.699

100

0.997
  ruvB Streptococcus pneumoniae TIGR4

99.398

100

0.994
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.429

98.193

0.593
  ruvB Helicobacter pylori 26695

50.774

97.289

0.494
  ruvB Synechocystis sp. PCC 6803

49.84

94.277

0.47

Multiple sequence alignment