Detailed information
Bioinformatically predicted
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | SMA_0092 | Genome accession | HE613569 |
| Coordinates | 101668..102609 (+) | Length | 313 a.a. |
| NCBI ID | CCF01383.1 | Uniprot ID | - |
| Organism | Streptococcus macedonicus ACA-DC 198 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 96668..107609
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMA_0090 | rpoC | 97421..101059 (+) | 3639 | CCF01381.1 | DNA-directed RNA polymerase beta' subunit | - |
| SMA_0091 | - | 101229..101558 (+) | 330 | CCF01382.1 | DNA binding protein | - |
| SMA_0092 | comYA | 101668..102609 (+) | 942 | CCF01383.1 | Late competence protein ComGA, access of DNA to ComEA | Machinery gene |
| SMA_0093 | comYB | 102491..103576 (+) | 1086 | CCF01384.1 | Late competence protein ComGB, access of DNA to ComEA | Machinery gene |
| SMA_0094 | comYC | 103576..103869 (+) | 294 | CCF01385.1 | Late competence protein ComGC, access of DNA to ComEA | Machinery gene |
| SMA_0095 | comYD | 103853..104284 (+) | 432 | CCF01386.1 | Late competence protein ComGD, access of DNA to ComEA | Machinery gene |
| SMA_0096 | comGE | 104289..104531 (+) | 243 | CCF01387.1 | Late competence protein ComGE | - |
| SMA_0097 | comYF | 104485..104952 (+) | 468 | CCF01388.1 | Late competence protein ComGF, access of DNA to ComEA | Machinery gene |
| SMA_0098 | comYG | 104924..105229 (+) | 306 | CCF01389.1 | Late competence protein ComGG | Machinery gene |
| SMA_0099 | comYH | 105311..106267 (+) | 957 | CCF01390.1 | Adenine-specific methyltransferase | Machinery gene |
| SMA_0100 | ackA | 106320..107519 (+) | 1200 | CCF01391.1 | Acetate kinase | - |
Sequence
Protein
Download Length: 313 a.a. Molecular weight: 35729.89 Da Isoelectric Point: 5.3009
>NTDB_id=20321 SMA_0092 CCF01383.1 101668..102609(+) (comYA) [Streptococcus macedonicus ACA-DC 198]
MIQEKAKQLIKDAVEVNAQDIYILPREDCYEVYQRVGDQRQFVDYFELEQMTSLISHFKFVAGMNVGEKRRSQLGSCDYQ
FADEEEISLRLSSVGDYRGRESLVIRLLYSGRHDLQYWFDGMKNILEAIDSRGLYLFSGPVGSGKTTLMYQLVREKFPNK
QVITIEDPVEIKQEQMLQLQLNSDIGMTYDELIKLSLRHRPDILIIGEIRDSETARAVIRASLTGAVVFSTIHAKSIPGV
YARLLELGLSKQELENSLRAIVYQRLIGGGGVIDFAKENFESHQPECWNTKIESLVKDGHITAEQAKIEKIAI
MIQEKAKQLIKDAVEVNAQDIYILPREDCYEVYQRVGDQRQFVDYFELEQMTSLISHFKFVAGMNVGEKRRSQLGSCDYQ
FADEEEISLRLSSVGDYRGRESLVIRLLYSGRHDLQYWFDGMKNILEAIDSRGLYLFSGPVGSGKTTLMYQLVREKFPNK
QVITIEDPVEIKQEQMLQLQLNSDIGMTYDELIKLSLRHRPDILIIGEIRDSETARAVIRASLTGAVVFSTIHAKSIPGV
YARLLELGLSKQELENSLRAIVYQRLIGGGGVIDFAKENFESHQPECWNTKIESLVKDGHITAEQAKIEKIAI
Nucleotide
Download Length: 942 bp
>NTDB_id=20321 SMA_0092 CCF01383.1 101668..102609(+) (comYA) [Streptococcus macedonicus ACA-DC 198]
ATGATTCAGGAAAAAGCAAAGCAACTCATTAAGGATGCTGTTGAAGTTAATGCGCAAGATATTTACATTTTACCTAGAGA
AGACTGTTATGAAGTGTATCAACGCGTGGGAGACCAACGGCAATTTGTTGATTATTTTGAACTAGAGCAGATGACTAGCT
TGATTAGTCATTTTAAATTTGTGGCAGGTATGAATGTTGGGGAGAAACGTCGTAGTCAGTTAGGTTCTTGTGATTATCAA
TTTGCAGATGAGGAAGAGATTTCGCTTCGTTTGTCGAGTGTTGGTGATTATCGCGGACGAGAAAGTTTGGTGATTCGCTT
GCTTTATTCTGGTCGTCATGACTTGCAATATTGGTTTGACGGGATGAAAAATATTTTAGAAGCTATTGACAGTAGGGGGC
TTTACCTTTTTTCGGGACCAGTAGGGAGTGGAAAAACCACTCTCATGTACCAATTGGTTCGTGAAAAATTTCCTAATAAG
CAAGTCATTACAATTGAGGATCCTGTTGAAATCAAACAGGAACAAATGTTGCAGTTGCAGTTAAATAGTGATATTGGGAT
GACTTATGACGAGCTGATTAAATTATCGCTTCGTCATAGACCAGATATTCTGATTATCGGAGAAATTCGTGATAGCGAGA
CAGCGCGTGCAGTTATTCGTGCGAGTTTGACGGGAGCTGTTGTATTTTCGACCATTCATGCGAAGAGCATCCCTGGCGTT
TACGCACGTCTTTTGGAATTGGGGCTTAGTAAGCAAGAATTGGAAAATAGTTTGCGTGCCATTGTTTATCAACGCTTAAT
TGGCGGAGGAGGTGTAATTGATTTTGCTAAAGAAAACTTTGAAAGTCACCAACCAGAGTGCTGGAATACAAAAATTGAAA
GTCTTGTTAAAGACGGACATATCACAGCTGAACAAGCAAAAATCGAAAAAATTGCCATTTAA
ATGATTCAGGAAAAAGCAAAGCAACTCATTAAGGATGCTGTTGAAGTTAATGCGCAAGATATTTACATTTTACCTAGAGA
AGACTGTTATGAAGTGTATCAACGCGTGGGAGACCAACGGCAATTTGTTGATTATTTTGAACTAGAGCAGATGACTAGCT
TGATTAGTCATTTTAAATTTGTGGCAGGTATGAATGTTGGGGAGAAACGTCGTAGTCAGTTAGGTTCTTGTGATTATCAA
TTTGCAGATGAGGAAGAGATTTCGCTTCGTTTGTCGAGTGTTGGTGATTATCGCGGACGAGAAAGTTTGGTGATTCGCTT
GCTTTATTCTGGTCGTCATGACTTGCAATATTGGTTTGACGGGATGAAAAATATTTTAGAAGCTATTGACAGTAGGGGGC
TTTACCTTTTTTCGGGACCAGTAGGGAGTGGAAAAACCACTCTCATGTACCAATTGGTTCGTGAAAAATTTCCTAATAAG
CAAGTCATTACAATTGAGGATCCTGTTGAAATCAAACAGGAACAAATGTTGCAGTTGCAGTTAAATAGTGATATTGGGAT
GACTTATGACGAGCTGATTAAATTATCGCTTCGTCATAGACCAGATATTCTGATTATCGGAGAAATTCGTGATAGCGAGA
CAGCGCGTGCAGTTATTCGTGCGAGTTTGACGGGAGCTGTTGTATTTTCGACCATTCATGCGAAGAGCATCCCTGGCGTT
TACGCACGTCTTTTGGAATTGGGGCTTAGTAAGCAAGAATTGGAAAATAGTTTGCGTGCCATTGTTTATCAACGCTTAAT
TGGCGGAGGAGGTGTAATTGATTTTGCTAAAGAAAACTTTGAAAGTCACCAACCAGAGTGCTGGAATACAAAAATTGAAA
GTCTTGTTAAAGACGGACATATCACAGCTGAACAAGCAAAAATCGAAAAAATTGCCATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus mutans UA159 |
69.132 |
99.361 |
0.687 |
| comYA | Streptococcus mutans UA140 |
68.81 |
99.361 |
0.684 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
67.419 |
99.042 |
0.668 |
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
65.273 |
99.361 |
0.649 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
62.821 |
99.681 |
0.626 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
62.5 |
99.681 |
0.623 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
62.5 |
99.681 |
0.623 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
62.5 |
99.681 |
0.623 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
62.5 |
99.681 |
0.623 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
55.272 |
100 |
0.553 |
| comGA | Latilactobacillus sakei subsp. sakei 23K |
43.116 |
88.179 |
0.38 |