Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   SMA_0097 Genome accession   HE613569
Coordinates   104485..104952 (+) Length   155 a.a.
NCBI ID   CCF01388.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99485..109952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0091 - 101229..101558 (+) 330 CCF01382.1 DNA binding protein -
  SMA_0092 comYA 101668..102609 (+) 942 CCF01383.1 Late competence protein ComGA, access of DNA to ComEA Machinery gene
  SMA_0093 comYB 102491..103576 (+) 1086 CCF01384.1 Late competence protein ComGB, access of DNA to ComEA Machinery gene
  SMA_0094 comYC 103576..103869 (+) 294 CCF01385.1 Late competence protein ComGC, access of DNA to ComEA Machinery gene
  SMA_0095 comYD 103853..104284 (+) 432 CCF01386.1 Late competence protein ComGD, access of DNA to ComEA Machinery gene
  SMA_0096 comGE 104289..104531 (+) 243 CCF01387.1 Late competence protein ComGE -
  SMA_0097 comYF 104485..104952 (+) 468 CCF01388.1 Late competence protein ComGF, access of DNA to ComEA Machinery gene
  SMA_0098 comYG 104924..105229 (+) 306 CCF01389.1 Late competence protein ComGG Machinery gene
  SMA_0099 comYH 105311..106267 (+) 957 CCF01390.1 Adenine-specific methyltransferase Machinery gene
  SMA_0100 ackA 106320..107519 (+) 1200 CCF01391.1 Acetate kinase -
  SMA_0101 - 107681..107881 (+) 201 CCF01392.1 Transcriptional regulator, Cro/CI family -
  SMA_0102 - 107891..108100 (+) 210 CCF01393.1 Hypothetical protein -
  SMA_0103 - 108113..108565 (+) 453 CCF01394.1 Hypothetical protein -
  SMA_0104 - 108577..109212 (+) 636 CCF01395.1 Membrane-bound protease, CAAX family -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17564.08 Da        Isoelectric Point: 9.2496

>NTDB_id=20325 SMA_0097 CCF01388.1 104485..104952(+) (comYF) [Streptococcus macedonicus ACA-DC 198]
MFMRGKRKYYTLKKTSLEAFSLIECLVSLLVISGAILVYNGLTQYISANVHYLSENQEENWLLFSQQLRAELANCQLDKV
ENNKLYVTKSSQKLAFGQSKADDFRKTNASGQGYQPMIFGVKSSAISRDGQKVTMTLNLENGLERTFVYTFETAS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=20325 SMA_0097 CCF01388.1 104485..104952(+) (comYF) [Streptococcus macedonicus ACA-DC 198]
ATGTTTATGAGGGGAAAACGGAAATATTACACGTTAAAAAAGACTAGTTTAGAGGCATTCAGCCTCATAGAATGTTTGGT
TTCTTTATTAGTAATTTCGGGTGCTATTCTTGTTTACAATGGCTTAACGCAATATATTTCTGCAAATGTGCATTATTTGT
CGGAAAATCAAGAGGAAAACTGGCTTTTGTTTTCACAACAGCTGCGTGCGGAGCTTGCCAATTGTCAATTAGATAAGGTT
GAAAATAACAAACTATATGTGACGAAGTCCAGTCAAAAGTTGGCATTTGGACAGTCAAAGGCTGATGATTTTCGTAAAAC
AAACGCATCTGGTCAAGGCTATCAGCCAATGATATTTGGAGTAAAATCTTCTGCTATTTCTAGAGATGGTCAGAAGGTGA
CAATGACATTGAATTTAGAGAATGGTTTGGAGAGGACATTTGTTTACACTTTTGAAACGGCAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

56.835

89.677

0.51
  comYF Streptococcus mutans UA159

56.115

89.677

0.503
  comGF/cglF Streptococcus pneumoniae Rx1

44.286

90.323

0.4
  comGF/cglF Streptococcus pneumoniae D39

44.286

90.323

0.4
  comGF/cglF Streptococcus pneumoniae R6

44.286

90.323

0.4
  comGF/cglF Streptococcus pneumoniae TIGR4

44.286

90.323

0.4
  comGF/cglF Streptococcus mitis NCTC 12261

42.958

91.613

0.394
  comGF/cglF Streptococcus mitis SK321

42.254

91.613

0.387
  comGF Lactococcus lactis subsp. cremoris KW2

43.478

89.032

0.387

Multiple sequence alignment