Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   SMA_0095 Genome accession   HE613569
Coordinates   103853..104284 (+) Length   143 a.a.
NCBI ID   CCF01386.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98853..109284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0091 - 101229..101558 (+) 330 CCF01382.1 DNA binding protein -
  SMA_0092 comYA 101668..102609 (+) 942 CCF01383.1 Late competence protein ComGA, access of DNA to ComEA Machinery gene
  SMA_0093 comYB 102491..103576 (+) 1086 CCF01384.1 Late competence protein ComGB, access of DNA to ComEA Machinery gene
  SMA_0094 comYC 103576..103869 (+) 294 CCF01385.1 Late competence protein ComGC, access of DNA to ComEA Machinery gene
  SMA_0095 comYD 103853..104284 (+) 432 CCF01386.1 Late competence protein ComGD, access of DNA to ComEA Machinery gene
  SMA_0096 comGE 104289..104531 (+) 243 CCF01387.1 Late competence protein ComGE -
  SMA_0097 comYF 104485..104952 (+) 468 CCF01388.1 Late competence protein ComGF, access of DNA to ComEA Machinery gene
  SMA_0098 comYG 104924..105229 (+) 306 CCF01389.1 Late competence protein ComGG Machinery gene
  SMA_0099 comYH 105311..106267 (+) 957 CCF01390.1 Adenine-specific methyltransferase Machinery gene
  SMA_0100 ackA 106320..107519 (+) 1200 CCF01391.1 Acetate kinase -
  SMA_0101 - 107681..107881 (+) 201 CCF01392.1 Transcriptional regulator, Cro/CI family -
  SMA_0102 - 107891..108100 (+) 210 CCF01393.1 Hypothetical protein -
  SMA_0103 - 108113..108565 (+) 453 CCF01394.1 Hypothetical protein -
  SMA_0104 - 108577..109212 (+) 636 CCF01395.1 Membrane-bound protease, CAAX family -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16060.45 Da        Isoelectric Point: 8.4345

>NTDB_id=20324 SMA_0095 CCF01386.1 103853..104284(+) (comYD) [Streptococcus macedonicus ACA-DC 198]
MKLKNKTVSAFTLLESLLTLGISCFIIMMFSGSLNGIFQNVEEKIFFLSFENLYCDTQKLANARQQILTLTVSQEEVSTD
FSTVKLPPSVKVDKTYQVNYDKAGGDSSLAKLTFQTSDKEVNYQLYLGSGKYKKTETKSLHTP

Nucleotide


Download         Length: 432 bp        

>NTDB_id=20324 SMA_0095 CCF01386.1 103853..104284(+) (comYD) [Streptococcus macedonicus ACA-DC 198]
ATGAAGCTAAAAAATAAAACTGTTTCAGCTTTTACCCTTTTAGAAAGTTTATTAACACTAGGAATTTCCTGTTTTATTAT
CATGATGTTTTCAGGCTCTTTGAATGGTATTTTTCAAAATGTGGAAGAAAAGATTTTCTTTTTATCGTTTGAAAATCTCT
ATTGTGACACGCAAAAATTAGCTAATGCTAGGCAACAAATTCTTACGTTGACCGTTTCGCAAGAGGAAGTGTCAACTGAT
TTTTCAACTGTAAAACTCCCTCCGTCGGTCAAAGTAGATAAAACTTATCAAGTCAATTATGACAAAGCAGGAGGCGATTC
GTCCTTGGCAAAATTAACCTTTCAAACGTCAGATAAAGAGGTCAACTATCAATTATATTTAGGGAGTGGTAAATATAAAA
AGACAGAAACTAAAAGCTTACATACTCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

53.435

91.608

0.49
  comYD Streptococcus mutans UA159

53.435

91.608

0.49
  comYD Streptococcus gordonii str. Challis substr. CH1

43.704

94.406

0.413
  comGD/cglD Streptococcus pneumoniae Rx1

43.939

92.308

0.406
  comGD/cglD Streptococcus pneumoniae D39

43.939

92.308

0.406
  comGD/cglD Streptococcus pneumoniae R6

43.939

92.308

0.406
  comGD/cglD Streptococcus pneumoniae TIGR4

43.939

92.308

0.406
  comGD/cglD Streptococcus mitis NCTC 12261

43.939

92.308

0.406
  comGD/cglD Streptococcus mitis SK321

42.857

93.007

0.399

Multiple sequence alignment