Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   SMA_0098 Genome accession   HE613569
Coordinates   104924..105229 (+) Length   101 a.a.
NCBI ID   CCF01389.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99924..110229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0091 - 101229..101558 (+) 330 CCF01382.1 DNA binding protein -
  SMA_0092 comYA 101668..102609 (+) 942 CCF01383.1 Late competence protein ComGA, access of DNA to ComEA Machinery gene
  SMA_0093 comYB 102491..103576 (+) 1086 CCF01384.1 Late competence protein ComGB, access of DNA to ComEA Machinery gene
  SMA_0094 comYC 103576..103869 (+) 294 CCF01385.1 Late competence protein ComGC, access of DNA to ComEA Machinery gene
  SMA_0095 comYD 103853..104284 (+) 432 CCF01386.1 Late competence protein ComGD, access of DNA to ComEA Machinery gene
  SMA_0096 comGE 104289..104531 (+) 243 CCF01387.1 Late competence protein ComGE -
  SMA_0097 comYF 104485..104952 (+) 468 CCF01388.1 Late competence protein ComGF, access of DNA to ComEA Machinery gene
  SMA_0098 comYG 104924..105229 (+) 306 CCF01389.1 Late competence protein ComGG Machinery gene
  SMA_0099 comYH 105311..106267 (+) 957 CCF01390.1 Adenine-specific methyltransferase Machinery gene
  SMA_0100 ackA 106320..107519 (+) 1200 CCF01391.1 Acetate kinase -
  SMA_0101 - 107681..107881 (+) 201 CCF01392.1 Transcriptional regulator, Cro/CI family -
  SMA_0102 - 107891..108100 (+) 210 CCF01393.1 Hypothetical protein -
  SMA_0103 - 108113..108565 (+) 453 CCF01394.1 Hypothetical protein -
  SMA_0104 - 108577..109212 (+) 636 CCF01395.1 Membrane-bound protease, CAAX family -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11576.50 Da        Isoelectric Point: 8.4268

>NTDB_id=20326 SMA_0098 CCF01389.1 104924..105229(+) (comYG) [Streptococcus macedonicus ACA-DC 198]
MFTLLKRQVKAGILIYALLMAAIFALLLQFYLGRVVAMERQHQAQLSASQAYLMAKLTKDLAKEDTGHLTFDQGVADYNF
QDNRLQVVVKLSNQQEFDYVF

Nucleotide


Download         Length: 306 bp        

>NTDB_id=20326 SMA_0098 CCF01389.1 104924..105229(+) (comYG) [Streptococcus macedonicus ACA-DC 198]
TTGTTTACACTTTTGAAACGGCAAGTTAAGGCAGGGATTTTAATCTATGCTTTGCTTATGGCAGCAATTTTTGCCTTGCT
TTTACAATTTTATCTAGGACGTGTCGTGGCAATGGAGCGACAACATCAAGCGCAGCTATCTGCTAGTCAGGCTTATTTAA
TGGCAAAATTAACAAAAGATTTGGCAAAAGAGGATACTGGTCACCTTACATTTGATCAAGGAGTAGCTGACTACAACTTC
CAAGATAATCGATTGCAGGTGGTGGTCAAACTGTCTAATCAACAAGAATTTGACTATGTTTTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

56.122

97.03

0.545
  comYG Streptococcus mutans UA159

56.122

97.03

0.545
  comGG/cglG Streptococcus mitis NCTC 12261

39.583

95.05

0.376

Multiple sequence alignment