Detailed information NTG0020322

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: SMA_0093
• Genome accession: HE613569
• Coordinates: 102491..103576 (+)
• Length: 361 a.a.
• NCBI ID: CCF01384.1
• Uniprot ID: -
• Organism: Streptococcus macedonicus ACA-DC 198
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 97491..108576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMA_0091	-	101229..101558 (+)	330	CCF01382.1	DNA binding protein	-
SMA_0092	comYA	101668..102609 (+)	942	CCF01383.1	Late competence protein ComGA, access of DNA to ComEA	Machinery gene
SMA_0093	comYB	102491..103576 (+)	1086	CCF01384.1	Late competence protein ComGB, access of DNA to ComEA	Machinery gene
SMA_0094	comYC	103576..103869 (+)	294	CCF01385.1	Late competence protein ComGC, access of DNA to ComEA	Machinery gene
SMA_0095	comYD	103853..104284 (+)	432	CCF01386.1	Late competence protein ComGD, access of DNA to ComEA	Machinery gene
SMA_0096	comGE	104289..104531 (+)	243	CCF01387.1	Late competence protein ComGE	-
SMA_0097	comYF	104485..104952 (+)	468	CCF01388.1	Late competence protein ComGF, access of DNA to ComEA	Machinery gene
SMA_0098	comYG	104924..105229 (+)	306	CCF01389.1	Late competence protein ComGG	Machinery gene
SMA_0099	comYH	105311..106267 (+)	957	CCF01390.1	Adenine-specific methyltransferase	Machinery gene
SMA_0100	ackA	106320..107519 (+)	1200	CCF01391.1	Acetate kinase	-
SMA_0101	-	107681..107881 (+)	201	CCF01392.1	Transcriptional regulator, Cro/CI family	-
SMA_0102	-	107891..108100 (+)	210	CCF01393.1	Hypothetical protein	-
SMA_0103	-	108113..108565 (+)	453	CCF01394.1	Hypothetical protein	-

Sequence

Protein

• Length: 361 a.a.
• Molecular weight: 41359.34 Da
• Isoelectric Point: 10.1651

>NTDB_id=20322 SMA_0093 CCF01384.1 102491..103576(+) (comYB) [Streptococcus macedonicus ACA-DC 198]
MLKKTLKVTNQSAGIQKLKVLLKTDISQLNKQKSKKLPFKKQRKVIQLFNNLFESGFNLTEIVSFLRRSQLLLDIYVERM
QESLLNGARLATMMADLGFSDSIVTQIALADVHGNSQKSLLKIESYLSSMTVVRKKLIEVATYPLILLLFLILIMLGMKN
YLLPQLESQNVATQIITHFPTIFLLSIFSIGVLLVCATFYARRLSQIDLYSRISRIPLVGNYVRLYLTAYYAREWGNLIG
QGIELMAIVKIMQKQKPLLFQEIGKDMEEALLSGQAFHQKVLGYPFFLRELSLMIEYGEVKSKLGRELDIYAEETWQRFF
GKLTQATQLIQPLVFVFVALIIVLIYVAMLLPMYQNMGGNF

Nucleotide

• Length: 1086 bp

>NTDB_id=20322 SMA_0093 CCF01384.1 102491..103576(+) (comYB) [Streptococcus macedonicus ACA-DC 198]
TTGCTAAAGAAAACTTTGAAAGTCACCAACCAGAGTGCTGGAATACAAAAATTGAAAGTCTTGTTAAAGACGGACATATC
ACAGCTGAACAAGCAAAAATCGAAAAAATTGCCATTTAAAAAACAGCGCAAGGTTATTCAACTCTTTAATAATCTTTTTG
AAAGTGGGTTTAATTTAACAGAAATCGTGTCTTTTCTCCGAAGAAGTCAATTGTTGTTAGACATTTATGTTGAGAGGATG
CAAGAAAGTTTGTTAAATGGTGCTAGACTAGCAACAATGATGGCAGATTTAGGGTTTTCAGACAGTATTGTCACACAAAT
TGCTTTGGCTGATGTTCATGGAAACAGTCAGAAAAGTCTGCTGAAGATTGAGTCTTACCTTTCTAGCATGACTGTCGTCA
GAAAAAAGTTGATTGAAGTTGCAACGTATCCATTGATTTTGTTGTTGTTTCTTATTTTGATTATGCTGGGGATGAAGAAT
TATCTACTGCCACAGCTGGAAAGCCAAAATGTGGCAACGCAGATTATTACGCATTTTCCAACGATTTTTTTGCTAAGTAT
TTTCTCGATTGGAGTCTTGCTTGTTTGTGCGACATTTTATGCTAGGCGTTTATCGCAGATTGATTTATATAGTCGCATAA
GCCGGATTCCACTTGTGGGAAACTATGTTAGGTTATATTTGACAGCTTACTATGCGCGTGAATGGGGAAATTTGATTGGG
CAAGGTATTGAATTAATGGCAATCGTGAAAATCATGCAAAAGCAAAAGCCGCTCTTATTTCAAGAGATTGGAAAGGATAT
GGAAGAAGCGTTGCTTTCAGGGCAAGCTTTTCATCAAAAAGTTCTAGGCTATCCATTCTTTTTGCGAGAATTGAGCCTAA
TGATTGAATATGGTGAGGTCAAATCGAAGCTGGGACGTGAGTTAGACATTTATGCTGAGGAAACATGGCAGAGATTCTTT
GGCAAATTGACTCAAGCAACACAGCTCATTCAACCACTTGTTTTTGTTTTTGTGGCTTTGATTATTGTGTTAATTTATGT
GGCAATGTTGTTGCCAATGTATCAAAATATGGGAGGAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (232-352)

• Type II secretion system (T2SS), protein F (T2SSF) (47-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	66.139	87.535	0.579
comYB	Streptococcus mutans UA159	65.823	87.535	0.576
comGB/cglB	Streptococcus mitis NCTC 12261	59.587	93.906	0.56
comYB	Streptococcus gordonii str. Challis substr. CH1	59.821	93.075	0.557
comGB/cglB	Streptococcus mitis SK321	56.973	93.352	0.532
comGB/cglB	Streptococcus pneumoniae Rx1	56.083	93.352	0.524
comGB/cglB	Streptococcus pneumoniae D39	56.083	93.352	0.524
comGB/cglB	Streptococcus pneumoniae R6	56.083	93.352	0.524
comGB/cglB	Streptococcus pneumoniae TIGR4	56.083	93.352	0.524
comGB	Lactococcus lactis subsp. cremoris KW2	49.123	94.737	0.465