Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | I596_RS18110 | Genome accession | NZ_CP015249 |
| Coordinates | 2915093..2915482 (+) | Length | 129 a.a. |
| NCBI ID | WP_083965547.1 | Uniprot ID | - |
| Organism | Dokdonella koreensis DS-123 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2910093..2920482
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I596_RS11835 (I596_2533) | tfpZ | 2913282..2914022 (+) | 741 | WP_067648107.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| I596_RS11840 (I596_2534) | - | 2914492..2914962 (+) | 471 | WP_067648111.1 | pilin | - |
| I596_RS18110 | pilA/pilAI | 2915093..2915482 (+) | 390 | WP_083965547.1 | pilin | Machinery gene |
| I596_RS11845 (I596_2535) | pilB | 2915670..2917385 (+) | 1716 | WP_067651867.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| I596_RS11850 (I596_2536) | pilC | 2917389..2918681 (+) | 1293 | WP_067648114.1 | type II secretion system F family protein | Machinery gene |
| I596_RS11855 (I596_2537) | pilD | 2918681..2919547 (+) | 867 | WP_067648117.1 | A24 family peptidase | Machinery gene |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 13079.21 Da Isoelectric Point: 6.1360
>NTDB_id=178053 I596_RS18110 WP_083965547.1 2915093..2915482(+) (pilA/pilAI) [Dokdonella koreensis DS-123]
MSTRGFTLIELMIVVAILAILATIAIPAYQGYVARSVAVSGLAEIAPGKAGFEAKINDGITSFTLGDIGLAATTDRCDIS
LNVATGTITCLLKGNPLLGGTTLILTRASGGDWSCSSTVPAPYKPSGCS
MSTRGFTLIELMIVVAILAILATIAIPAYQGYVARSVAVSGLAEIAPGKAGFEAKINDGITSFTLGDIGLAATTDRCDIS
LNVATGTITCLLKGNPLLGGTTLILTRASGGDWSCSSTVPAPYKPSGCS
Nucleotide
Download Length: 390 bp
>NTDB_id=178053 I596_RS18110 WP_083965547.1 2915093..2915482(+) (pilA/pilAI) [Dokdonella koreensis DS-123]
ATGAGCACTCGAGGATTTACGCTCATCGAGCTGATGATTGTTGTCGCGATTCTTGCAATCCTCGCGACAATTGCCATTCC
AGCGTATCAAGGCTATGTCGCGCGCTCAGTTGCGGTGTCTGGGCTTGCCGAGATAGCGCCAGGAAAGGCCGGGTTTGAAG
CCAAGATCAACGACGGAATCACATCCTTCACGCTTGGCGACATCGGTCTCGCTGCGACGACCGATCGATGCGACATCTCC
TTGAATGTCGCCACCGGCACGATCACCTGCCTATTGAAAGGCAATCCACTGCTTGGCGGCACAACGCTCATTCTGACCCG
GGCGAGCGGGGGCGATTGGAGCTGCTCTTCCACGGTACCGGCACCGTACAAACCTAGCGGCTGTTCGTGA
ATGAGCACTCGAGGATTTACGCTCATCGAGCTGATGATTGTTGTCGCGATTCTTGCAATCCTCGCGACAATTGCCATTCC
AGCGTATCAAGGCTATGTCGCGCGCTCAGTTGCGGTGTCTGGGCTTGCCGAGATAGCGCCAGGAAAGGCCGGGTTTGAAG
CCAAGATCAACGACGGAATCACATCCTTCACGCTTGGCGACATCGGTCTCGCTGCGACGACCGATCGATGCGACATCTCC
TTGAATGTCGCCACCGGCACGATCACCTGCCTATTGAAAGGCAATCCACTGCTTGGCGGCACAACGCTCATTCTGACCCG
GGCGAGCGGGGGCGATTGGAGCTGCTCTTCCACGGTACCGGCACCGTACAAACCTAGCGGCTGTTCGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
52.632 |
100 |
0.543 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
50 |
100 |
0.519 |
| pilA | Acinetobacter baumannii strain A118 |
48.12 |
100 |
0.496 |
| pilA | Pseudomonas aeruginosa PAK |
38.776 |
100 |
0.442 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.876 |
100 |
0.434 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.791 |
100 |
0.434 |
| pilA2 | Legionella pneumophila str. Paris |
40.146 |
100 |
0.426 |
| pilA | Vibrio cholerae strain A1552 |
38.571 |
100 |
0.419 |
| pilA | Vibrio cholerae C6706 |
38.571 |
100 |
0.419 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.571 |
100 |
0.419 |
| comP | Acinetobacter baylyi ADP1 |
36.62 |
100 |
0.403 |
| pilA | Haemophilus influenzae 86-028NP |
41.667 |
93.023 |
0.388 |
| pilA | Haemophilus influenzae Rd KW20 |
41.667 |
93.023 |
0.388 |