Detailed information NTG0178046

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: I596_RS11850
• Genome accession: NZ_CP015249
• Coordinates: 2917389..2918681 (+)
• Length: 430 a.a.
• NCBI ID: WP_067648114.1
• Uniprot ID: -
• Organism: Dokdonella koreensis DS-123
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2912389..2923681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I596_RS11835 (I596_2533)	tfpZ	2913282..2914022 (+)	741	WP_067648107.1	TfpX/TfpZ family type IV pilin accessory protein	-
I596_RS11840 (I596_2534)	-	2914492..2914962 (+)	471	WP_067648111.1	pilin	-
I596_RS18110	pilA/pilAI	2915093..2915482 (+)	390	WP_083965547.1	pilin	Machinery gene
I596_RS11845 (I596_2535)	pilB	2915670..2917385 (+)	1716	WP_067651867.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I596_RS11850 (I596_2536)	pilC	2917389..2918681 (+)	1293	WP_067648114.1	type II secretion system F family protein	Machinery gene
I596_RS11855 (I596_2537)	pilD	2918681..2919547 (+)	867	WP_067648117.1	A24 family peptidase	Machinery gene
I596_RS11860 (I596_2538)	-	2919678..2920829 (-)	1152	WP_083965548.1	efflux RND transporter periplasmic adaptor subunit	-

Sequence

Protein

• Length: 430 a.a.
• Molecular weight: 46663.09 Da
• Isoelectric Point: 10.1514

>NTDB_id=178046 I596_RS11850 WP_067648114.1 2917389..2918681(+) (pilC) [Dokdonella koreensis DS-123]
MATVTALRAKQAKAQADARSKVARERAKVSELQTFVWVGLDKRGTKIKGETSSKNASLVKADLRKQGINPQTVKPKPKPL
FGKSGSSIKSREIAIFARQLATMMAAGVPMVQGFEIVAGGQKNQRMKDMLTNIKTDIEGGSALNEALGKYPVQFDELFRN
LVRAGEASGVLDTILDTVATYKENIESIKGKIKKAMFYPAAVIAVAIIVSCVLLIFVIPQFEAVFKGFGTDLPAFTLMLV
AASDFLVEWWWALLLVLVGAITAFVFTIKRSTKFEHLVGRLMLKIPVVGEILRQSAIARYARTLGVTFKAGVPLVEALDS
VSGATGSPVYNEAVKRIRDDVSVGHQLQLAMKQTDLFPNMVTQMVAIGEEAGALDAMLFKVAEFYEEEVKNAVDALSSLL
EPFIMVIIGVVVGGMVIGMYLPIFKLASVV

Nucleotide

• Length: 1293 bp

>NTDB_id=178046 I596_RS11850 WP_067648114.1 2917389..2918681(+) (pilC) [Dokdonella koreensis DS-123]
ATGGCAACCGTCACCGCACTCCGAGCGAAACAGGCCAAGGCCCAGGCCGACGCCCGATCAAAAGTGGCCCGGGAGCGCGC
AAAGGTCAGTGAGCTGCAGACCTTTGTCTGGGTCGGCTTGGACAAGCGCGGCACCAAGATCAAGGGCGAGACCAGCAGCA
AGAACGCCAGCTTGGTCAAGGCGGACTTGCGCAAGCAAGGCATCAACCCGCAAACCGTCAAGCCGAAGCCAAAACCCTTG
TTCGGCAAAAGTGGCAGCTCGATCAAATCTCGCGAAATCGCCATTTTCGCGCGCCAGCTGGCGACGATGATGGCGGCCGG
CGTGCCGATGGTGCAAGGCTTCGAGATCGTCGCTGGCGGCCAGAAAAATCAGCGCATGAAGGACATGCTGACCAACATCA
AGACGGACATCGAGGGCGGGTCGGCGCTGAACGAGGCGCTTGGGAAGTATCCCGTGCAGTTCGACGAACTGTTCCGCAAC
CTCGTTCGTGCCGGCGAGGCCTCCGGCGTGCTCGATACGATTCTCGACACGGTCGCAACGTACAAAGAAAACATCGAGAG
TATCAAGGGGAAAATTAAGAAGGCAATGTTCTATCCGGCTGCTGTTATCGCAGTTGCCATCATCGTCTCTTGCGTCCTCT
TGATCTTTGTTATTCCCCAGTTCGAAGCCGTATTCAAAGGATTTGGAACCGACCTCCCAGCTTTTACGTTGATGCTGGTA
GCGGCGTCTGATTTCCTTGTCGAATGGTGGTGGGCTTTACTGCTTGTCCTTGTCGGCGCGATTACTGCTTTTGTCTTTAC
GATAAAACGATCGACAAAATTCGAACATCTTGTCGGGCGGCTCATGTTGAAGATTCCAGTCGTGGGAGAAATCCTGCGGC
AATCCGCCATAGCCCGCTACGCACGTACGCTCGGCGTCACGTTCAAGGCGGGTGTTCCTCTGGTGGAGGCTCTCGATTCC
GTGTCCGGCGCCACCGGCAGCCCGGTCTACAACGAGGCGGTCAAGCGCATCCGCGATGACGTCTCGGTCGGCCATCAGCT
GCAACTGGCAATGAAGCAGACGGACCTCTTTCCCAACATGGTCACGCAGATGGTCGCGATCGGCGAAGAAGCCGGCGCGC
TCGACGCGATGCTGTTCAAGGTGGCCGAGTTCTACGAAGAAGAGGTCAAGAACGCCGTCGATGCGCTGTCCAGCCTGCTG
GAACCGTTCATCATGGTGATCATCGGCGTGGTGGTCGGTGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGC
GTCTGTCGTTTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (301-422)

• Type II secretion system (T2SS), protein F (T2SSF) (96-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	55.639	92.791	0.516
pilC	Pseudomonas stutzeri DSM 10701	55.051	92.093	0.507
pilC	Acinetobacter baumannii D1279779	51.98	93.953	0.488
pilC	Acinetobacter baylyi ADP1	51.485	93.953	0.484
pilG	Neisseria meningitidis 44/76-A	43.25	93.023	0.402
pilG	Neisseria gonorrhoeae MS11	43.25	93.023	0.402
pilC	Vibrio campbellii strain DS40M4	39	93.023	0.363