Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   ATM98_RS07950 Genome accession   NZ_CP013651
Coordinates   1636404..1636721 (+) Length   105 a.a.
NCBI ID   WP_023022076.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631404..1641721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS07935 (ATM98_07935) - 1634019..1634396 (+) 378 WP_061564644.1 DUF1033 family protein -
  ATM98_RS07940 (ATM98_07940) comYA 1634502..1635443 (+) 942 WP_048691344.1 competence type IV pilus ATPase ComGA Machinery gene
  ATM98_RS07945 (ATM98_07945) comYB 1635385..1636407 (+) 1023 WP_061564645.1 competence type IV pilus assembly protein ComGB Machinery gene
  ATM98_RS07950 (ATM98_07950) comYC 1636404..1636721 (+) 318 WP_023022076.1 competence type IV pilus major pilin ComGC Machinery gene
  ATM98_RS07955 (ATM98_07955) comGD/cglD 1636690..1637115 (+) 426 WP_061564646.1 competence type IV pilus minor pilin ComGD Machinery gene
  ATM98_RS07960 (ATM98_07960) comGE 1637081..1637374 (+) 294 WP_061564647.1 competence type IV pilus minor pilin ComGE -
  ATM98_RS07965 (ATM98_07965) comGF/cglF 1637358..1637810 (+) 453 WP_061564817.1 competence type IV pilus minor pilin ComGF Machinery gene
  ATM98_RS07970 (ATM98_07970) comGG 1637776..1638222 (+) 447 WP_061564648.1 competence type IV pilus minor pilin ComGG -
  ATM98_RS07975 (ATM98_07975) comYH 1638254..1639207 (+) 954 WP_061564649.1 class I SAM-dependent methyltransferase Machinery gene
  ATM98_RS07980 (ATM98_07980) - 1639256..1640452 (+) 1197 WP_048789482.1 acetate kinase -
  ATM98_RS07985 (ATM98_07985) - 1640604..1641278 (+) 675 WP_223363686.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11703.65 Da        Isoelectric Point: 9.8248

>NTDB_id=163424 ATM98_RS07950 WP_023022076.1 1636404..1636721(+) (comYC) [Streptococcus sp. A12]
MKSLRTLKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVTDTGNRAVVKVVESQAELYELNHQNEKASLSKLVAEGQ
ITQKQAEAYRAHYVKNAGDHRAVAD

Nucleotide


Download         Length: 318 bp        

>NTDB_id=163424 ATM98_RS07950 WP_023022076.1 1636404..1636721(+) (comYC) [Streptococcus sp. A12]
ATGAAATCATTGCGCACACTCAAGGTAAAAGCTTTTACTCTGATTGAAATGTTAGTTGTTTTGCTCATTATCAGCGTTCT
TCTCTTGCTCTTTGTTCCGAACTTGACCAAGCAGAAAGATTCGGTAACAGATACAGGAAATCGAGCAGTCGTCAAAGTCG
TGGAGAGCCAGGCTGAGCTCTATGAACTCAATCATCAGAATGAAAAAGCTAGTCTTTCTAAGCTTGTCGCAGAAGGACAA
ATCACTCAAAAACAAGCAGAAGCCTACCGTGCTCACTATGTGAAGAATGCAGGTGATCACCGTGCGGTTGCAGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis SK321

69.524

100

0.695
  comYC Streptococcus gordonii str. Challis substr. CH1

69.524

100

0.695
  comYC Streptococcus mutans UA140

67.619

100

0.676
  comYC Streptococcus mutans UA159

67.619

100

0.676
  comGC/cglC Streptococcus pneumoniae TIGR4

66.667

100

0.667
  comGC/cglC Streptococcus pneumoniae D39

66.667

100

0.667
  comGC/cglC Streptococcus pneumoniae Rx1

66.667

100

0.667
  comGC/cglC Streptococcus mitis NCTC 12261

66.667

100

0.667
  comGC/cglC Streptococcus pneumoniae R6

66.667

100

0.667
  comGC Lactococcus lactis subsp. cremoris KW2

61.224

93.333

0.571
  comYC Streptococcus suis isolate S10

64.045

84.762

0.543
  comGC Staphylococcus aureus MW2

51.282

74.286

0.381
  comGC Staphylococcus aureus N315

51.282

74.286

0.381

Multiple sequence alignment