Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   ATM98_RS07945 Genome accession   NZ_CP013651
Coordinates   1635385..1636407 (+) Length   340 a.a.
NCBI ID   WP_061564645.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630385..1641407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS07935 (ATM98_07935) - 1634019..1634396 (+) 378 WP_061564644.1 DUF1033 family protein -
  ATM98_RS07940 (ATM98_07940) comYA 1634502..1635443 (+) 942 WP_048691344.1 competence type IV pilus ATPase ComGA Machinery gene
  ATM98_RS07945 (ATM98_07945) comYB 1635385..1636407 (+) 1023 WP_061564645.1 competence type IV pilus assembly protein ComGB Machinery gene
  ATM98_RS07950 (ATM98_07950) comYC 1636404..1636721 (+) 318 WP_023022076.1 competence type IV pilus major pilin ComGC Machinery gene
  ATM98_RS07955 (ATM98_07955) comGD/cglD 1636690..1637115 (+) 426 WP_061564646.1 competence type IV pilus minor pilin ComGD Machinery gene
  ATM98_RS07960 (ATM98_07960) comGE 1637081..1637374 (+) 294 WP_061564647.1 competence type IV pilus minor pilin ComGE -
  ATM98_RS07965 (ATM98_07965) comGF/cglF 1637358..1637810 (+) 453 WP_061564817.1 competence type IV pilus minor pilin ComGF Machinery gene
  ATM98_RS07970 (ATM98_07970) comGG 1637776..1638222 (+) 447 WP_061564648.1 competence type IV pilus minor pilin ComGG -
  ATM98_RS07975 (ATM98_07975) comYH 1638254..1639207 (+) 954 WP_061564649.1 class I SAM-dependent methyltransferase Machinery gene
  ATM98_RS07980 (ATM98_07980) - 1639256..1640452 (+) 1197 WP_048789482.1 acetate kinase -
  ATM98_RS07985 (ATM98_07985) - 1640604..1641278 (+) 675 WP_223363686.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38894.96 Da        Isoelectric Point: 10.1204

>NTDB_id=163423 ATM98_RS07945 WP_061564645.1 1635385..1636407(+) (comYB) [Streptococcus sp. A12]
MKRDILSWIRRKPKKLSIAKQEHVIELFHNLYSSGFHLSEVIDFLRRSQLVEANFVERMQAGLANGKPLSAILSDLGFSD
QVTTQLALAEQHGNVTLSLEKIRSYLENLTQVRKKLVEVATYPVLLLGFLILIMLGLKNYLLPQLESQNGATRLISVFPQ
YILLGSVLLTIGVLMLLFLGRRAKRLALVSSLARLPFLRPFLQDYLTAFYAREWGSMIAQGLELNQVFPVMQGQRSRLFR
EIGQDLERALARGRSFSDHIQIYPFFKRELALMIEYGEAKSKLGSELEIYADKTWAGFFHRLNKAMNVVQPLVFVFVAFM
IVLLYAAMLLPIYENLEVPL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=163423 ATM98_RS07945 WP_061564645.1 1635385..1636407(+) (comYB) [Streptococcus sp. A12]
ATGAAGCGGGACATATTGAGCTGGATCAGGCGCAAGCCGAAAAAATTATCGATTGCTAAGCAAGAACATGTCATTGAGCT
CTTTCACAATCTCTACAGTAGTGGCTTTCATCTATCAGAGGTCATCGACTTTCTTCGGCGCAGTCAATTGGTAGAAGCCA
ATTTTGTTGAAAGAATGCAAGCTGGACTTGCCAACGGAAAGCCCCTGTCAGCCATTCTCTCTGATCTAGGTTTCTCCGAT
CAGGTAACGACTCAATTGGCACTGGCAGAGCAGCATGGAAATGTTACCTTAAGTTTGGAAAAAATCCGTAGCTACTTGGA
AAATCTGACCCAGGTTCGAAAGAAACTAGTTGAGGTGGCGACCTATCCCGTGCTCTTGTTGGGATTTTTGATCTTGATTA
TGCTGGGGCTGAAAAATTATCTCTTGCCTCAGTTGGAGAGTCAAAATGGGGCGACACGACTGATCAGTGTTTTTCCCCAG
TATATTTTGTTAGGGAGTGTGTTGCTGACGATTGGAGTTTTGATGCTCCTTTTCCTAGGCCGTCGTGCCAAGCGACTGGC
CCTGGTTTCATCTTTGGCTAGACTTCCTTTTCTTCGCCCCTTCCTACAGGATTATCTGACAGCTTTTTATGCTCGAGAAT
GGGGAAGTATGATTGCCCAAGGGTTGGAGCTGAATCAAGTTTTTCCTGTGATGCAGGGGCAACGTTCCCGTCTCTTTCGA
GAGATTGGACAGGATTTAGAACGGGCATTGGCTCGTGGCAGGTCTTTTTCTGACCATATTCAGATTTATCCTTTCTTTAA
ACGAGAGCTGGCCCTCATGATTGAATATGGGGAGGCCAAGTCCAAGCTCGGTAGTGAGTTGGAAATCTATGCAGACAAGA
CCTGGGCAGGCTTTTTCCATCGTTTGAACAAGGCCATGAATGTCGTCCAACCACTGGTCTTTGTCTTTGTTGCTTTTATG
ATTGTTTTGCTCTATGCAGCCATGTTGCTGCCTATTTATGAAAATTTGGAGGTTCCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

62.281

100

0.626
  comGB/cglB Streptococcus mitis NCTC 12261

60.417

98.824

0.597
  comGB/cglB Streptococcus mitis SK321

59.524

98.824

0.588
  comGB/cglB Streptococcus pneumoniae Rx1

58.929

98.824

0.582
  comGB/cglB Streptococcus pneumoniae D39

58.929

98.824

0.582
  comGB/cglB Streptococcus pneumoniae R6

58.929

98.824

0.582
  comGB/cglB Streptococcus pneumoniae TIGR4

58.929

98.824

0.582
  comYB Streptococcus mutans UA159

58.991

93.235

0.55
  comYB Streptococcus mutans UA140

58.991

93.235

0.55
  comGB Lactococcus lactis subsp. cremoris KW2

47.813

100

0.482

Multiple sequence alignment