Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | ATM98_RS07975 | Genome accession | NZ_CP013651 |
| Coordinates | 1638254..1639207 (+) | Length | 317 a.a. |
| NCBI ID | WP_061564649.1 | Uniprot ID | - |
| Organism | Streptococcus sp. A12 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1633254..1644207
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATM98_RS07935 (ATM98_07935) | - | 1634019..1634396 (+) | 378 | WP_061564644.1 | DUF1033 family protein | - |
| ATM98_RS07940 (ATM98_07940) | comYA | 1634502..1635443 (+) | 942 | WP_048691344.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ATM98_RS07945 (ATM98_07945) | comYB | 1635385..1636407 (+) | 1023 | WP_061564645.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ATM98_RS07950 (ATM98_07950) | comYC | 1636404..1636721 (+) | 318 | WP_023022076.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ATM98_RS07955 (ATM98_07955) | comGD/cglD | 1636690..1637115 (+) | 426 | WP_061564646.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ATM98_RS07960 (ATM98_07960) | comGE | 1637081..1637374 (+) | 294 | WP_061564647.1 | competence type IV pilus minor pilin ComGE | - |
| ATM98_RS07965 (ATM98_07965) | comGF/cglF | 1637358..1637810 (+) | 453 | WP_061564817.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ATM98_RS07970 (ATM98_07970) | comGG | 1637776..1638222 (+) | 447 | WP_061564648.1 | competence type IV pilus minor pilin ComGG | - |
| ATM98_RS07975 (ATM98_07975) | comYH | 1638254..1639207 (+) | 954 | WP_061564649.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ATM98_RS07980 (ATM98_07980) | - | 1639256..1640452 (+) | 1197 | WP_048789482.1 | acetate kinase | - |
| ATM98_RS07985 (ATM98_07985) | - | 1640604..1641278 (+) | 675 | WP_223363686.1 | type II CAAX endopeptidase family protein | - |
| ATM98_RS07990 (ATM98_07990) | folP | 1641438..1642394 (+) | 957 | WP_061564651.1 | dihydropteroate synthase | - |
| ATM98_RS07995 (ATM98_07995) | - | 1642411..1643715 (+) | 1305 | WP_061564652.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36018.76 Da Isoelectric Point: 4.2243
>NTDB_id=163427 ATM98_RS07975 WP_061564649.1 1638254..1639207(+) (comYH) [Streptococcus sp. A12]
MNFEKIEKAYGYLLENTQTIQNDLQTNFYDALVEQNAIYLDGQTELTLVKENNQRLRDLNLNKEEWRRSFQYLLMKAAQT
EPLQANHQFTPDGIGFLLVFLVDQLASSDQVDVLEMGSGTGNLAQTLMNNCQRSLDYLGLEIDDLLIDLAASMAEVMKAD
VNFAQGDAVRPQVLKESDVIVSDLPVGYYPDDAIASRYQVASPQGNTYAHHLLIEQSLKYLKPGGVAIFLAPNDLLTSEQ
SPLLKQWMQDHAQVLAMVTLPENLFRSANLAKTIFVLRKQEEAVVQPFVYPLTDLQDQEDLMKFRESFQNWNKESEI
MNFEKIEKAYGYLLENTQTIQNDLQTNFYDALVEQNAIYLDGQTELTLVKENNQRLRDLNLNKEEWRRSFQYLLMKAAQT
EPLQANHQFTPDGIGFLLVFLVDQLASSDQVDVLEMGSGTGNLAQTLMNNCQRSLDYLGLEIDDLLIDLAASMAEVMKAD
VNFAQGDAVRPQVLKESDVIVSDLPVGYYPDDAIASRYQVASPQGNTYAHHLLIEQSLKYLKPGGVAIFLAPNDLLTSEQ
SPLLKQWMQDHAQVLAMVTLPENLFRSANLAKTIFVLRKQEEAVVQPFVYPLTDLQDQEDLMKFRESFQNWNKESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=163427 ATM98_RS07975 WP_061564649.1 1638254..1639207(+) (comYH) [Streptococcus sp. A12]
ATGAATTTCGAAAAAATTGAGAAAGCCTACGGCTACCTATTAGAAAATACCCAAACTATCCAAAATGATTTGCAGACCAA
CTTTTATGATGCTCTAGTGGAGCAGAATGCCATCTATCTGGATGGGCAAACAGAGTTGACTCTAGTGAAGGAAAACAATC
AGCGGCTGAGGGACTTGAACTTGAACAAGGAAGAATGGCGTCGCTCCTTCCAGTATCTTTTGATGAAGGCTGCTCAAACA
GAGCCTCTACAAGCCAATCACCAATTTACGCCAGATGGGATTGGATTTCTTCTGGTCTTTCTAGTGGATCAGTTGGCTAG
TTCCGATCAAGTAGATGTGCTAGAAATGGGAAGTGGAACGGGGAACTTGGCCCAAACCTTGATGAACAACTGTCAGCGCT
CCTTAGATTATTTGGGCTTGGAAATCGATGATCTCTTGATTGACCTTGCGGCCAGTATGGCAGAAGTGATGAAGGCGGAT
GTGAATTTTGCCCAAGGTGATGCCGTTCGGCCACAGGTTTTGAAGGAGAGCGATGTGATTGTCAGCGATTTACCTGTCGG
TTATTATCCAGATGATGCCATTGCGAGTCGTTACCAGGTCGCTTCCCCTCAGGGCAACACCTATGCCCATCATTTATTGA
TCGAACAATCGCTAAAATACTTAAAACCAGGTGGTGTCGCTATTTTTCTAGCTCCGAATGATCTTTTGACGAGCGAGCAG
AGTCCTCTGTTGAAACAATGGATGCAGGATCATGCTCAGGTCTTGGCCATGGTGACCTTGCCAGAGAACCTCTTTCGATC
AGCCAATCTAGCAAAAACCATCTTTGTTTTACGCAAGCAAGAAGAAGCGGTGGTCCAACCATTTGTCTATCCCTTGACCG
ATTTGCAAGATCAGGAAGACCTTATGAAATTCCGTGAAAGTTTTCAAAACTGGAATAAAGAAAGTGAAATTTAA
ATGAATTTCGAAAAAATTGAGAAAGCCTACGGCTACCTATTAGAAAATACCCAAACTATCCAAAATGATTTGCAGACCAA
CTTTTATGATGCTCTAGTGGAGCAGAATGCCATCTATCTGGATGGGCAAACAGAGTTGACTCTAGTGAAGGAAAACAATC
AGCGGCTGAGGGACTTGAACTTGAACAAGGAAGAATGGCGTCGCTCCTTCCAGTATCTTTTGATGAAGGCTGCTCAAACA
GAGCCTCTACAAGCCAATCACCAATTTACGCCAGATGGGATTGGATTTCTTCTGGTCTTTCTAGTGGATCAGTTGGCTAG
TTCCGATCAAGTAGATGTGCTAGAAATGGGAAGTGGAACGGGGAACTTGGCCCAAACCTTGATGAACAACTGTCAGCGCT
CCTTAGATTATTTGGGCTTGGAAATCGATGATCTCTTGATTGACCTTGCGGCCAGTATGGCAGAAGTGATGAAGGCGGAT
GTGAATTTTGCCCAAGGTGATGCCGTTCGGCCACAGGTTTTGAAGGAGAGCGATGTGATTGTCAGCGATTTACCTGTCGG
TTATTATCCAGATGATGCCATTGCGAGTCGTTACCAGGTCGCTTCCCCTCAGGGCAACACCTATGCCCATCATTTATTGA
TCGAACAATCGCTAAAATACTTAAAACCAGGTGGTGTCGCTATTTTTCTAGCTCCGAATGATCTTTTGACGAGCGAGCAG
AGTCCTCTGTTGAAACAATGGATGCAGGATCATGCTCAGGTCTTGGCCATGGTGACCTTGCCAGAGAACCTCTTTCGATC
AGCCAATCTAGCAAAAACCATCTTTGTTTTACGCAAGCAAGAAGAAGCGGTGGTCCAACCATTTGTCTATCCCTTGACCG
ATTTGCAAGATCAGGAAGACCTTATGAAATTCCGTGAAAGTTTTCAAAACTGGAATAAAGAAAGTGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
59.048 |
99.369 |
0.587 |
| comYH | Streptococcus mutans UA159 |
58.73 |
99.369 |
0.584 |