Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   ATM98_RS07955 Genome accession   NZ_CP013651
Coordinates   1636690..1637115 (+) Length   141 a.a.
NCBI ID   WP_061564646.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631690..1642115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS07935 (ATM98_07935) - 1634019..1634396 (+) 378 WP_061564644.1 DUF1033 family protein -
  ATM98_RS07940 (ATM98_07940) comYA 1634502..1635443 (+) 942 WP_048691344.1 competence type IV pilus ATPase ComGA Machinery gene
  ATM98_RS07945 (ATM98_07945) comYB 1635385..1636407 (+) 1023 WP_061564645.1 competence type IV pilus assembly protein ComGB Machinery gene
  ATM98_RS07950 (ATM98_07950) comYC 1636404..1636721 (+) 318 WP_023022076.1 competence type IV pilus major pilin ComGC Machinery gene
  ATM98_RS07955 (ATM98_07955) comGD/cglD 1636690..1637115 (+) 426 WP_061564646.1 competence type IV pilus minor pilin ComGD Machinery gene
  ATM98_RS07960 (ATM98_07960) comGE 1637081..1637374 (+) 294 WP_061564647.1 competence type IV pilus minor pilin ComGE -
  ATM98_RS07965 (ATM98_07965) comGF/cglF 1637358..1637810 (+) 453 WP_061564817.1 competence type IV pilus minor pilin ComGF Machinery gene
  ATM98_RS07970 (ATM98_07970) comGG 1637776..1638222 (+) 447 WP_061564648.1 competence type IV pilus minor pilin ComGG -
  ATM98_RS07975 (ATM98_07975) comYH 1638254..1639207 (+) 954 WP_061564649.1 class I SAM-dependent methyltransferase Machinery gene
  ATM98_RS07980 (ATM98_07980) - 1639256..1640452 (+) 1197 WP_048789482.1 acetate kinase -
  ATM98_RS07985 (ATM98_07985) - 1640604..1641278 (+) 675 WP_223363686.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15795.34 Da        Isoelectric Point: 8.0219

>NTDB_id=163425 ATM98_RS07955 WP_061564646.1 1636690..1637115(+) (comGD/cglD) [Streptococcus sp. A12]
MQVITVRLQIKAFTLLESLLTLGIVSLLCWLLVGSVHQAFGQVEETLFFSEFERVYQETQKMSIAKEERALLSIDHGGVR
SPYQELPLPKGVEVVREKQLTFDPAGGNSSLTKIQFQTEKEVVTYQLAIGNGKIKKSTAPR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=163425 ATM98_RS07955 WP_061564646.1 1636690..1637115(+) (comGD/cglD) [Streptococcus sp. A12]
ATGCAGGTGATCACCGTGCGGTTGCAGATTAAGGCTTTCACCCTTTTAGAGAGCTTATTAACTTTAGGTATCGTCAGTCT
TCTATGTTGGCTGCTAGTTGGGTCAGTCCATCAAGCCTTTGGGCAGGTAGAAGAAACATTGTTTTTCTCGGAATTCGAAC
GGGTCTATCAGGAGACACAAAAGATGAGTATTGCAAAAGAGGAGAGAGCTCTCCTTTCCATCGACCACGGTGGGGTTCGT
AGTCCCTATCAAGAATTACCGCTTCCAAAAGGGGTGGAAGTGGTCAGAGAGAAGCAACTGACCTTTGATCCAGCAGGAGG
CAATTCAAGCCTGACCAAGATTCAATTTCAGACAGAGAAAGAGGTGGTGACCTATCAGTTGGCAATTGGGAATGGAAAAA
TTAAAAAATCGACGGCTCCCCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus mitis NCTC 12261

52.713

91.489

0.482
  comGD/cglD Streptococcus pneumoniae TIGR4

52.756

90.071

0.475
  comGD/cglD Streptococcus pneumoniae D39

51.969

90.071

0.468
  comGD/cglD Streptococcus pneumoniae R6

51.969

90.071

0.468
  comGD/cglD Streptococcus pneumoniae Rx1

51.969

90.071

0.468
  comYD Streptococcus gordonii str. Challis substr. CH1

50

93.617

0.468
  comGD/cglD Streptococcus mitis SK321

51.181

90.071

0.461
  comYD Streptococcus mutans UA140

48.462

92.199

0.447
  comYD Streptococcus mutans UA159

48.462

92.199

0.447

Multiple sequence alignment