Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LI63_RS20730 Genome accession   NZ_CP012165
Coordinates   4031660..4032640 (-) Length   326 a.a.
NCBI ID   WP_003860028.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. xiangfangensis strain 34978     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4026660..4037640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI63_RS20700 (LI63_021040) - 4027537..4028034 (+) 498 WP_003860035.1 SprT family zinc-dependent metalloprotease -
  LI63_RS20705 (LI63_021045) endA 4028129..4028836 (+) 708 WP_003860034.1 deoxyribonuclease I -
  LI63_RS20710 (LI63_021050) rsmE 4028888..4029619 (+) 732 WP_003860033.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LI63_RS20715 (LI63_021055) gshB 4029651..4030598 (+) 948 WP_003860032.1 glutathione synthase -
  LI63_RS20720 (LI63_021060) - 4030673..4031233 (+) 561 WP_022649353.1 YqgE/AlgH family protein -
  LI63_RS20725 (LI63_021065) ruvX 4031233..4031649 (+) 417 WP_003860030.1 Holliday junction resolvase RuvX -
  LI63_RS20730 (LI63_021070) pilT 4031660..4032640 (-) 981 WP_003860028.1 type IV pilus twitching motility protein PilT Machinery gene
  LI63_RS20735 (LI63_021075) - 4032658..4033359 (+) 702 WP_032610102.1 YggS family pyridoxal phosphate-dependent enzyme -
  LI63_RS20740 (LI63_021080) - 4033381..4033947 (+) 567 WP_003860024.1 YggT family protein -
  LI63_RS20745 (LI63_021085) yggU 4033944..4034240 (+) 297 WP_003860023.1 DUF167 family protein YggU -
  LI63_RS20750 (LI63_021090) - 4034244..4034837 (+) 594 WP_032610103.1 XTP/dITP diphosphatase -
  LI63_RS20755 (LI63_021095) hemW 4034830..4035978 (+) 1149 WP_032610104.1 radical SAM family heme chaperone HemW -
  LI63_RS20760 (LI63_021100) - 4036035..4036397 (+) 363 WP_022651832.1 endonuclease domain-containing protein -
  LI63_RS20765 (LI63_021105) - 4036464..4037180 (-) 717 WP_003862419.1 DUF2884 domain-containing protein -
  LI63_RS20770 (LI63_021110) - 4037238..4037564 (-) 327 WP_003862421.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35622.60 Da        Isoelectric Point: 6.2335

>NTDB_id=152020 LI63_RS20730 WP_003860028.1 4031660..4032640(-) (pilT) [Enterobacter hormaechei subsp. xiangfangensis strain 34978]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRSGRLEPAPFPPPDVEALLKAWLNDEQQGAWWANGQVDFAVTLTGGQRLRG
SAFKHMHGVSIALRLLPLTCPQLSALGVPRAIPELLSNDNGLILVTGATGSGKSTTLAAMVDFLNHQTDGHILTLEDPVE
FMYQSERCLIQQREIGLHSPSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLRQDVQGGRVALYELLVNTSAAANLIREGKTWQLPGIIQTGQQAGMQNFEQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=152020 LI63_RS20730 WP_003860028.1 4031660..4032640(-) (pilT) [Enterobacter hormaechei subsp. xiangfangensis strain 34978]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCACCTCCGCG
CTGGCGCAGGTCAGGCCGTCTTGAACCTGCGCCGTTTCCGCCCCCGGATGTGGAGGCGTTATTAAAAGCGTGGCTCAACG
ATGAACAGCAGGGCGCCTGGTGGGCAAACGGGCAGGTGGATTTTGCCGTTACCCTCACAGGCGGTCAGCGGCTGCGCGGC
AGTGCGTTTAAGCATATGCACGGCGTTTCGATCGCGCTGCGCCTGTTGCCGCTGACGTGCCCGCAGCTCTCTGCGTTAGG
CGTGCCGCGCGCGATCCCGGAGCTTTTGTCCAATGACAATGGCCTGATTCTGGTCACCGGCGCCACCGGCAGCGGGAAAT
CGACCACTCTGGCCGCGATGGTCGATTTCCTCAATCACCAGACGGACGGGCATATTCTGACCCTGGAAGATCCGGTGGAG
TTTATGTACCAGAGTGAACGTTGCCTGATCCAGCAGCGGGAGATAGGCCTGCACAGCCCGTCCTTTGCCGAGGCCCTGCG
CAGCGCTCTGCGTGAAGATCCGGATGTGATTCTGCTTGGTGAGCTGCGCGACAGCGAGACGATACGCCTGGCGCTGACGG
CGGCGGAAACCGGCCATCTGGTGTTGGCCACGCTGCACACGCGCGGTGCGGCGCAGGCGATCGAGCGCCTGGTCGACACC
TTTCCGGCGCAGGAGAAAGATCCGGTGCGTAATCAGCTGGCGGGAAGCCTGCGTGCGGTTCTGGCGCAGAAGCTGCGTCA
GGATGTCCAGGGCGGGCGCGTGGCGCTGTATGAGCTGCTGGTGAATACCTCGGCGGCGGCAAACCTGATCCGCGAAGGCA
AAACCTGGCAACTGCCGGGCATTATTCAAACGGGGCAGCAGGCGGGAATGCAGAACTTTGAGCAGAGTCTGGCGGAGCGA
CGGGCGCAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(75-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.459

100

0.506
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.459

100

0.506
  pilT Pseudomonas stutzeri DSM 10701

48.012

100

0.482
  pilT Legionella pneumophila strain Lp02

48.447

98.773

0.479
  pilT Legionella pneumophila strain ERS1305867

48.447

98.773

0.479
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Acinetobacter baumannii D1279779

47.095

100

0.472
  pilT Acinetobacter baumannii strain A118

47.095

100

0.472
  pilT Pseudomonas aeruginosa PAK

47.095

100

0.472
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

47.5

98.16

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.344

99.08

0.429
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

38.509

98.773

0.38

Multiple sequence alignment