Detailed information NTG0150910

Bioinformatically predicted

Overview

• Name: pilE
• Type: Machinery gene
• Locus tag: AC612_RS07085
• Genome accession: NZ_CP012055
• Coordinates: 1548010..1548450 (+)
• Length: 146 a.a.
• NCBI ID: WP_005934296.1
• Uniprot ID: -
• Organism: Xanthomonas citri pv. fuscans strain ISO12C3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1548657..1549754	1548010..1548450	flank	207

Gene organization within MGE regions

Location: 1548010..1549754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AC612_RS07085 (AC612_06670)	pilE	1548010..1548450 (+)	441	WP_005934296.1	pilin	Machinery gene
AC612_RS24360	-	1548514..1548660 (-)	147	WP_158526406.1	hypothetical protein	-
AC612_RS07090 (AC612_06675)	-	1548657..1549754 (-)	1098	WP_046831597.1	IS5 family transposase	-

Sequence

Protein

• Length: 146 a.a.
• Molecular weight: 14934.04 Da
• Isoelectric Point: 9.0090

>NTDB_id=150910 AC612_RS07085 WP_005934296.1 1548010..1548450(+) (pilE) [Xanthomonas citri pv. fuscans strain ISO12C3]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLETAANIKG
KYITSVTVSSGGVITALFNSSNAKLSGKNLVLTPTDNNGSISWGCSTGTTIDQKYLPTSCRTAATP

Nucleotide

• Length: 441 bp

>NTDB_id=150910 AC612_RS07085 WP_005934296.1 1548010..1548450(+) (pilE) [Xanthomonas citri pv. fuscans strain ISO12C3]
ATGAAGAAGCAAAACGGTTTTACGTTGATCGAACTCATGATCGTGGTCGCGATCATTGCGATCCTGGCTGCAATTGCTCT
GCCGGCTTATCAGGACTACCTTGCGCGTTCGCAGGTTTCTGAAGGTCTGTCGCTGGCATCGGGTGCAAAGACCGCAGTTG
CTGAGACGTATGCCAACACTGGTGCATTTCCGGCCAACAACGCAGCGGCCGGTCTTGAGACTGCGGCAAACATCAAGGGT
AAGTACATCACCTCGGTGACCGTTAGCTCTGGTGGCGTCATCACTGCGCTGTTTAATAGCTCCAATGCGAAGCTGAGTGG
TAAGAACCTCGTCCTGACTCCGACGGACAACAACGGGTCGATTAGCTGGGGCTGCAGCACTGGCACCACCATCGATCAGA
AGTATCTGCCTACCTCTTGCCGTACTGCGGCTACCCCGTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

• Pilin (bacterial filament) (Pilin) (35-141)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilE	Neisseria gonorrhoeae MS11	48.75	100	0.534
pilE	Neisseria gonorrhoeae strain FA1090	47.742	100	0.507
pilA2	Legionella pneumophila str. Paris	50.714	95.89	0.486
pilA2	Legionella pneumophila strain ERS1305867	50	95.89	0.479
pilA/pilA1	Eikenella corrodens VA1	45.161	100	0.479
comP	Acinetobacter baylyi ADP1	46	100	0.473
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	35.87	100	0.452
pilA	Ralstonia pseudosolanacearum GMI1000	38.415	100	0.432
pilA	Acinetobacter baumannii strain A118	42.282	100	0.432
pilA	Vibrio cholerae strain A1552	39.474	100	0.411
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	39.474	100	0.411
pilA	Vibrio cholerae C6706	39.474	100	0.411
pilA	Pseudomonas aeruginosa PAK	38.816	100	0.404
pilA	Vibrio campbellii strain DS40M4	37.584	100	0.384
pilA/pilAI	Pseudomonas stutzeri DSM 10701	38.849	95.205	0.37