Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | IJ00_RS13480 | Genome accession | NZ_CP011382 |
| Coordinates | 3207405..3208529 (-) | Length | 374 a.a. |
| NCBI ID | WP_035153813.1 | Uniprot ID | A0A0T7BSP3 |
| Organism | Calothrix sp. 336/3 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3202405..3213529
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IJ00_RS13460 (IJ00_13450) | - | 3203888..3204892 (+) | 1005 | WP_035153807.1 | saccharopine dehydrogenase-like oxidoreductase | - |
| IJ00_RS13465 (IJ00_13455) | - | 3204965..3205516 (-) | 552 | WP_035153809.1 | hypothetical protein | - |
| IJ00_RS13475 (IJ00_13465) | - | 3205790..3207001 (-) | 1212 | WP_035153811.1 | type II secretion system F family protein | - |
| IJ00_RS13480 (IJ00_13470) | pilT | 3207405..3208529 (-) | 1125 | WP_035153813.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| IJ00_RS13485 (IJ00_13475) | pilB/pilB1 | 3208685..3210703 (-) | 2019 | WP_035153815.1 | GspE/PulE family protein | Machinery gene |
| IJ00_RS13490 (IJ00_13480) | grpE | 3210935..3211669 (+) | 735 | WP_082127325.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 374 a.a. Molecular weight: 41124.29 Da Isoelectric Point: 7.1081
>NTDB_id=145328 IJ00_RS13480 WP_035153813.1 3207405..3208529(-) (pilT) [Calothrix sp. 336/3]
MEFMIEDLMEDMIEQGGSDMHLSAGLPPYFRVSGHLTPQDKYGVMTPDSCQRLIFSMLNNTQRKTLEQNWELDCSYGVKG
LARFRVNVYKERGAYAACLRALSSKIPNFDKLGLPDIVREMSEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILT
VEDPIEFVYESIKSVVHQRQLGEDTKSFANALKAALREDPDIVLVGEMRDLETISLAISAAETGHLVFGTLHTSSASQTV
DRMIDVFPSERQQQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMVITPAISNLIREGKTSQIYSAIQTGGKLG
MQTLEKVLADYYKAGVISFEAAMSKTSKPDEIQRLIGGVPPQGNGAKAGAMKAH
MEFMIEDLMEDMIEQGGSDMHLSAGLPPYFRVSGHLTPQDKYGVMTPDSCQRLIFSMLNNTQRKTLEQNWELDCSYGVKG
LARFRVNVYKERGAYAACLRALSSKIPNFDKLGLPDIVREMSEKPRGLILVTGPTGSGKTTTLAAMIDLINRTRAEHILT
VEDPIEFVYESIKSVVHQRQLGEDTKSFANALKAALREDPDIVLVGEMRDLETISLAISAAETGHLVFGTLHTSSASQTV
DRMIDVFPSERQQQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMVITPAISNLIREGKTSQIYSAIQTGGKLG
MQTLEKVLADYYKAGVISFEAAMSKTSKPDEIQRLIGGVPPQGNGAKAGAMKAH
Nucleotide
Download Length: 1125 bp
>NTDB_id=145328 IJ00_RS13480 WP_035153813.1 3207405..3208529(-) (pilT) [Calothrix sp. 336/3]
ATGGAATTCATGATTGAAGATTTAATGGAGGATATGATTGAGCAAGGTGGGTCTGATATGCACTTATCCGCCGGATTACC
TCCTTATTTTCGTGTTAGTGGTCACCTCACTCCCCAAGATAAATATGGTGTAATGACTCCCGATTCTTGCCAAAGATTAA
TCTTTAGTATGTTGAATAATACCCAACGCAAAACTTTAGAGCAGAATTGGGAATTAGACTGTTCCTATGGTGTGAAAGGT
TTGGCTCGGTTTCGGGTGAACGTATATAAGGAACGGGGAGCCTATGCTGCTTGTTTAAGGGCATTAAGCTCTAAAATCCC
TAACTTTGATAAATTAGGATTACCTGATATTGTTAGGGAAATGTCGGAAAAACCCAGGGGATTAATTTTGGTGACTGGTC
CTACTGGTTCCGGGAAAACTACTACTTTGGCGGCAATGATTGATTTAATTAATCGTACTCGTGCCGAGCATATTCTCACC
GTTGAAGACCCCATTGAATTTGTTTATGAATCTATTAAAAGTGTAGTTCACCAACGGCAGTTAGGTGAAGATACTAAGAG
TTTTGCCAATGCGTTGAAAGCTGCATTGCGGGAAGACCCTGATATTGTACTTGTCGGAGAAATGCGAGATTTAGAAACAA
TTTCTTTGGCAATTTCGGCGGCAGAAACTGGGCACTTAGTATTTGGAACTTTACACACCAGTTCTGCTTCTCAAACAGTT
GACCGGATGATTGATGTTTTCCCTTCCGAACGACAACAACAAGTCCGAGTTCAGTTATCCAACTCTTTAGTTGCTGTATT
TAGTCAAACTCTTGTACCTAAGAAAAATCCTAAACCTGGTGAATACGGACGGGTAATGGCTCAGGAAATTATGGTAATTA
CGCCAGCAATTTCTAACTTAATTAGAGAAGGTAAAACTTCTCAAATCTACTCAGCTATTCAAACTGGTGGCAAGTTAGGA
ATGCAAACCTTAGAAAAGGTTTTAGCTGATTACTATAAAGCTGGAGTAATCTCTTTTGAAGCAGCAATGTCTAAAACTTC
TAAACCTGATGAAATTCAACGTCTGATTGGTGGTGTACCACCCCAAGGAAATGGTGCTAAAGCTGGTGCTATGAAAGCCC
ATTAA
ATGGAATTCATGATTGAAGATTTAATGGAGGATATGATTGAGCAAGGTGGGTCTGATATGCACTTATCCGCCGGATTACC
TCCTTATTTTCGTGTTAGTGGTCACCTCACTCCCCAAGATAAATATGGTGTAATGACTCCCGATTCTTGCCAAAGATTAA
TCTTTAGTATGTTGAATAATACCCAACGCAAAACTTTAGAGCAGAATTGGGAATTAGACTGTTCCTATGGTGTGAAAGGT
TTGGCTCGGTTTCGGGTGAACGTATATAAGGAACGGGGAGCCTATGCTGCTTGTTTAAGGGCATTAAGCTCTAAAATCCC
TAACTTTGATAAATTAGGATTACCTGATATTGTTAGGGAAATGTCGGAAAAACCCAGGGGATTAATTTTGGTGACTGGTC
CTACTGGTTCCGGGAAAACTACTACTTTGGCGGCAATGATTGATTTAATTAATCGTACTCGTGCCGAGCATATTCTCACC
GTTGAAGACCCCATTGAATTTGTTTATGAATCTATTAAAAGTGTAGTTCACCAACGGCAGTTAGGTGAAGATACTAAGAG
TTTTGCCAATGCGTTGAAAGCTGCATTGCGGGAAGACCCTGATATTGTACTTGTCGGAGAAATGCGAGATTTAGAAACAA
TTTCTTTGGCAATTTCGGCGGCAGAAACTGGGCACTTAGTATTTGGAACTTTACACACCAGTTCTGCTTCTCAAACAGTT
GACCGGATGATTGATGTTTTCCCTTCCGAACGACAACAACAAGTCCGAGTTCAGTTATCCAACTCTTTAGTTGCTGTATT
TAGTCAAACTCTTGTACCTAAGAAAAATCCTAAACCTGGTGAATACGGACGGGTAATGGCTCAGGAAATTATGGTAATTA
CGCCAGCAATTTCTAACTTAATTAGAGAAGGTAAAACTTCTCAAATCTACTCAGCTATTCAAACTGGTGGCAAGTTAGGA
ATGCAAACCTTAGAAAAGGTTTTAGCTGATTACTATAAAGCTGGAGTAATCTCTTTTGAAGCAGCAATGTCTAAAACTTC
TAAACCTGATGAAATTCAACGTCTGATTGGTGGTGTACCACCCCAAGGAAATGGTGCTAAAGCTGGTGCTATGAAAGCCC
ATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
53.276 |
93.85 |
0.5 |
| pilT | Legionella pneumophila strain Lp02 |
52.137 |
93.85 |
0.489 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.137 |
93.85 |
0.489 |
| pilT | Pseudomonas stutzeri DSM 10701 |
52.89 |
92.513 |
0.489 |
| pilT | Acinetobacter baumannii D1279779 |
52.023 |
92.513 |
0.481 |
| pilT | Acinetobacter nosocomialis M2 |
52.023 |
92.513 |
0.481 |
| pilT | Acinetobacter baumannii strain A118 |
52.023 |
92.513 |
0.481 |
| pilT | Acinetobacter baylyi ADP1 |
51.445 |
92.513 |
0.476 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.688 |
91.711 |
0.447 |
| pilT | Vibrio cholerae strain A1552 |
48.688 |
91.711 |
0.447 |
| pilT | Neisseria gonorrhoeae MS11 |
49.408 |
90.374 |
0.447 |
| pilT | Neisseria meningitidis 8013 |
49.112 |
90.374 |
0.444 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.293 |
93.85 |
0.444 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.202 |
95.187 |
0.364 |