Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AAX10_RS06845 Genome accession   NZ_CP011381
Coordinates   1503730..1504764 (+) Length   344 a.a.
NCBI ID   WP_046700213.1    Uniprot ID   -
Organism   Moraxella bovoculi strain 58086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1498730..1509764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAX10_RS06820 (AAX10_06720) - 1498783..1499412 (-) 630 WP_046700210.1 PilN domain-containing protein -
  AAX10_RS06825 (AAX10_06725) pilM 1499405..1500661 (-) 1257 WP_046700211.1 type IV pilus biogenesis protein PilM -
  AAX10_RS06830 (AAX10_06730) - 1500694..1500978 (-) 285 WP_046698467.1 hypothetical protein -
  AAX10_RS06835 (AAX10_06735) - 1501259..1502917 (+) 1659 WP_226997844.1 NAD+ synthase -
  AAX10_RS06840 (AAX10_06740) - 1502963..1503640 (-) 678 WP_046700212.1 YggS family pyridoxal phosphate-dependent enzyme -
  AAX10_RS06845 (AAX10_06745) pilT 1503730..1504764 (+) 1035 WP_046700213.1 type IV pilus twitching motility protein PilT Machinery gene
  AAX10_RS06850 (AAX10_06750) fur 1504867..1505301 (-) 435 WP_036366493.1 ferric iron uptake transcriptional regulator -
  AAX10_RS06855 (AAX10_06755) - 1505621..1505980 (+) 360 WP_036366490.1 outer membrane protein assembly factor BamE -
  AAX10_RS06860 (AAX10_06760) - 1506039..1506380 (-) 342 WP_226997754.1 RnfH family protein -
  AAX10_RS06865 (AAX10_06765) - 1506377..1507471 (-) 1095 WP_046700214.1 hypothetical protein -
  AAX10_RS06870 (AAX10_06770) - 1507580..1508269 (-) 690 WP_036366487.1 c-type cytochrome -
  AAX10_RS06875 (AAX10_06775) - 1508565..1508861 (-) 297 WP_046700215.1 c-type cytochrome -
  AAX10_RS06880 (AAX10_06780) - 1508934..1509413 (-) 480 WP_149038871.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37845.56 Da        Isoelectric Point: 6.7863

>NTDB_id=145317 AAX10_RS06845 WP_046700213.1 1503730..1504764(+) (pilT) [Moraxella bovoculi strain 58086]
MNAPTLSTLLAYAIQSGASDLHLSTGETPYLRIDGSMTSVSMLPLSHDDIIAMLGVHMSDDQLEELAEHKEIDFSFEIKE
LSRFRANIFFQNRGVAAVFRIIPSQIPTMSSLNLGDTFKQLCALRQGLILVTGATGSGKSTTLAAMIDHINETRAAHILT
IEDPIEFIHHSKCSLINQREVHRDTHSFDHALKSALRQDPDVILIGELRDLKSIRLALRAAETGHLVLSTLHTNSATKAI
DRIINVFDSHEKNMVRAMLSESLQAIIAQTLIPKVNGGRIAAHEIMIATPAIRNLIRENKTAQMRSTIQTGAVDGMVSLE
HSLRHLIEHGLINIDAAKAITKDI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=145317 AAX10_RS06845 WP_046700213.1 1503730..1504764(+) (pilT) [Moraxella bovoculi strain 58086]
ATGAACGCACCCACTTTGTCGACGCTGCTCGCCTACGCCATACAATCTGGCGCATCGGACCTACACCTATCCACAGGCGA
GACACCCTACCTGCGTATTGATGGCAGCATGACTTCGGTGAGCATGCTGCCTTTATCGCATGACGATATCATCGCCATGC
TGGGTGTGCACATGAGTGATGATCAGCTAGAGGAATTAGCAGAACACAAAGAAATTGATTTTTCTTTTGAAATCAAAGAA
TTATCAAGATTCCGCGCGAATATATTTTTCCAAAATCGTGGTGTGGCAGCGGTTTTTCGCATCATCCCCAGCCAGATACC
AACCATGTCATCGCTGAATCTTGGCGATACCTTTAAGCAGTTATGCGCCCTACGCCAAGGCCTAATTCTCGTCACAGGCG
CAACAGGGTCAGGCAAATCCACAACACTTGCTGCCATGATCGATCACATCAATGAGACACGCGCCGCACACATTTTAACC
ATCGAAGATCCGATTGAGTTCATCCATCATTCCAAGTGCTCGCTCATCAATCAGCGCGAAGTACATCGCGACACACACAG
CTTTGATCACGCACTAAAGTCTGCCTTGCGTCAAGATCCTGACGTGATATTAATCGGAGAATTGCGTGATTTAAAGAGTA
TTCGACTTGCTCTACGCGCTGCCGAGACAGGTCACTTGGTGCTGTCCACCCTGCACACCAATAGCGCTACTAAGGCGATC
GATCGCATTATTAATGTCTTTGATTCACATGAGAAGAACATGGTTCGCGCCATGTTGTCTGAATCCCTACAAGCCATCAT
CGCCCAGACGCTGATACCCAAGGTAAATGGCGGACGCATCGCTGCGCACGAAATCATGATCGCCACACCCGCCATTAGAA
ACCTGATACGCGAAAATAAAACTGCACAAATGCGTTCAACCATCCAAACAGGTGCAGTCGATGGCATGGTCAGCTTAGAA
CACAGCCTAAGACATCTCATCGAGCACGGCTTGATCAATATCGACGCCGCCAAAGCAATCACCAAAGACATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

59.941

97.965

0.587
  pilT Acinetobacter nosocomialis M2

59.941

97.965

0.587
  pilT Acinetobacter baumannii strain A118

59.941

97.965

0.587
  pilT Acinetobacter baylyi ADP1

59.05

97.965

0.578
  pilT Pseudomonas stutzeri DSM 10701

58.16

97.965

0.57
  pilT Pseudomonas aeruginosa PAK

58.16

97.965

0.57
  pilT Legionella pneumophila strain ERS1305867

58.537

95.349

0.558
  pilT Legionella pneumophila strain Lp02

58.537

95.349

0.558
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

56.707

95.349

0.541
  pilT Vibrio cholerae strain A1552

56.707

95.349

0.541
  pilT Neisseria gonorrhoeae MS11

53.593

97.093

0.52
  pilT Neisseria meningitidis 8013

53.293

97.093

0.517
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.036

96.221

0.462
  pilU Acinetobacter baylyi ADP1

40.476

97.674

0.395
  pilU Pseudomonas stutzeri DSM 10701

40.24

96.802

0.39

Multiple sequence alignment