Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AAX11_RS02565 Genome accession   NZ_CP011379
Coordinates   538188..539222 (-) Length   344 a.a.
NCBI ID   WP_046696235.1    Uniprot ID   -
Organism   Moraxella bovoculi strain 33362     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533188..544222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAX11_RS02535 (AAX11_02535) - 534093..534389 (+) 297 WP_046696231.1 cytochrome c5 family protein -
  AAX11_RS02540 (AAX11_02540) - 534685..535374 (+) 690 WP_046696232.1 cytochrome c -
  AAX11_RS02545 (AAX11_02545) - 535483..536577 (+) 1095 WP_046696233.1 hypothetical protein -
  AAX11_RS02550 (AAX11_02550) - 536574..536891 (+) 318 WP_227503133.1 RnfH family protein -
  AAX11_RS02555 (AAX11_02555) - 536972..537331 (-) 360 WP_036366490.1 outer membrane protein assembly factor BamE -
  AAX11_RS02560 (AAX11_02560) fur 537651..538085 (+) 435 WP_046696234.1 ferric iron uptake transcriptional regulator -
  AAX11_RS02565 (AAX11_02565) pilT 538188..539222 (-) 1035 WP_046696235.1 type IV pilus twitching motility protein PilT Machinery gene
  AAX11_RS02570 (AAX11_02570) - 539311..539988 (+) 678 WP_046696236.1 YggS family pyridoxal phosphate-dependent enzyme -
  AAX11_RS02575 (AAX11_02575) - 540034..541692 (-) 1659 WP_227503163.1 NAD+ synthase -
  AAX11_RS02580 (AAX11_02580) - 541973..542257 (+) 285 WP_046696238.1 hypothetical protein -
  AAX11_RS02585 (AAX11_02585) pilM 542290..543546 (+) 1257 WP_046696239.1 pilus assembly protein PilM -
  AAX11_RS02590 (AAX11_02590) - 543539..544168 (+) 630 WP_046696240.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37956.71 Da        Isoelectric Point: 6.6896

>NTDB_id=145283 AAX11_RS02565 WP_046696235.1 538188..539222(-) (pilT) [Moraxella bovoculi strain 33362]
MNAPTLSTLLAYAIQSGASDLHLSTGEMLYLRIDGSMTSVSMLPLSHDDIIAMLGIHMSDDQLEQLAEHKEIDFSFEIRE
LSRFRANIFFQNRGVAAVFRIIPSQIPTMSSLNLGDTFKRLCALRQGLILVTGATGSGKSTTLAAMIDHINETRAAHILT
IEDPIEFIHHSKRSLINQREVHRDTHSFDHALKSALREDPDVILIGELRDLESIRLALRAAETGHLVLSTLHTNSATKAI
DRIIDVFDSHEKNMIRAMLSESLQAIIAQTLIPKVNGGRIAAHEIMIATPAIRNLIRDNKTAQMRSAIQTGAVDGMVSLE
HSLRHLIEHGLINIDAAKAIAKDI

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=145283 AAX11_RS02565 WP_046696235.1 538188..539222(-) (pilT) [Moraxella bovoculi strain 33362]
ATGAACGCACCCACTTTATCCACGCTGCTCGCCTACGCCATACAATCTGGCGCATCAGACCTACACCTATCCACAGGCGA
GATGCTCTATCTGCGCATTGATGGCAGCATGACTTCGGTGAGCATGCTGCCTTTATCGCATGACGATATCATCGCCATGC
TGGGCATACACATGAGTGATGATCAGCTAGAACAATTAGCAGAACACAAAGAAATTGATTTTTCTTTTGAAATCAGAGAA
TTATCAAGATTCCGCGCGAATATATTTTTCCAAAATCGTGGTGTGGCAGCGGTTTTTCGCATCATCCCCAGCCAGATACC
AACCATGTCATCGCTGAATCTTGGCGATACCTTTAAGCGGTTATGCGCCCTACGCCAAGGCCTAATTCTCGTCACAGGCG
CAACAGGGTCAGGCAAATCCACAACACTCGCTGCCATGATCGATCACATCAATGAGACACGCGCCGCACACATTTTAACC
ATCGAAGATCCGATTGAGTTCATCCATCATTCCAAGCGCTCGCTCATCAATCAGCGCGAAGTACATCGCGACACACACAG
CTTTGATCACGCGCTAAAGTCTGCCTTGCGTGAAGATCCTGACGTGATATTAATCGGAGAATTGCGTGATTTAGAGAGTA
TTCGACTTGCTCTACGCGCTGCCGAGACAGGTCACTTGGTACTGTCCACCCTGCATACCAATAGCGCTACTAAGGCGATC
GATCGCATTATTGATGTCTTTGATTCACATGAGAAGAACATGATTCGCGCCATGTTGTCTGAATCCTTACAAGCCATCAT
CGCCCAGACGCTGATACCCAAGGTAAATGGCGGACGCATCGCTGCGCACGAAATCATGATCGCCACACCCGCCATTAGAA
ACCTGATACGCGACAATAAAACCGCACAAATGCGTTCAGCCATCCAAACAGGTGCAGTCGATGGCATGGTCAGCTTAGAA
CACAGCCTAAGACATCTCATCGAGCACGGCTTGATCAATATCGACGCCGCCAAAGCAATCGCCAAAGACATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

60.534

97.965

0.593
  pilT Acinetobacter nosocomialis M2

60.534

97.965

0.593
  pilT Acinetobacter baumannii strain A118

60.534

97.965

0.593
  pilT Acinetobacter baylyi ADP1

59.347

97.965

0.581
  pilT Pseudomonas aeruginosa PAK

59.05

97.965

0.578
  pilT Pseudomonas stutzeri DSM 10701

58.457

97.965

0.573
  pilT Legionella pneumophila strain ERS1305867

58.232

95.349

0.555
  pilT Legionella pneumophila strain Lp02

58.232

95.349

0.555
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

56.402

95.349

0.538
  pilT Vibrio cholerae strain A1552

56.402

95.349

0.538
  pilT Neisseria gonorrhoeae MS11

53.097

98.547

0.523
  pilT Neisseria meningitidis 8013

52.802

98.547

0.52
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.036

96.221

0.462
  pilU Acinetobacter baylyi ADP1

40.476

97.674

0.395
  pilU Pseudomonas stutzeri DSM 10701

39.339

96.802

0.381

Multiple sequence alignment