Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | XB05_RS23000 | Genome accession | NZ_CP011256 |
| Coordinates | 2561493..2561918 (-) | Length | 141 a.a. |
| NCBI ID | WP_046346033.1 | Uniprot ID | - |
| Organism | Xanthomonas arboricola strain 17 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2556493..2566918
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XB05_RS10795 (XB05_10795) | pilR | 2557520..2558914 (+) | 1395 | WP_046343938.1 | sigma-54 dependent transcriptional regulator | Regulator |
| XB05_RS10800 (XB05_10800) | pilB | 2559214..2560923 (-) | 1710 | WP_205622422.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XB05_RS22995 (XB05_10805) | - | 2560993..2561478 (-) | 486 | WP_144410817.1 | pilin | - |
| XB05_RS23000 (XB05_10810) | pilA | 2561493..2561918 (-) | 426 | WP_046346033.1 | pilin | Machinery gene |
| XB05_RS10815 (XB05_10815) | pilC | 2562322..2563578 (+) | 1257 | WP_046346034.1 | type II secretion system F family protein | Machinery gene |
| XB05_RS10820 (XB05_10820) | - | 2563585..2564448 (+) | 864 | WP_046343941.1 | A24 family peptidase | - |
| XB05_RS10825 (XB05_10825) | coaE | 2564462..2565073 (+) | 612 | WP_046343943.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14172.39 Da Isoelectric Point: 9.2205
>NTDB_id=143989 XB05_RS23000 WP_046346033.1 2561493..2561918(-) (pilA) [Xanthomonas arboricola strain 17]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRARTTEALARASAAKVLVTENASNGSPLAQGFVNTAPATPNVAAN
GVAVSDVGVITVTLTTAAGGGTIALTPTPALVAGTPPVGPISWTCTGTNTNKSRLPAECRG
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRARTTEALARASAAKVLVTENASNGSPLAQGFVNTAPATPNVAAN
GVAVSDVGVITVTLTTAAGGGTIALTPTPALVAGTPPVGPISWTCTGTNTNKSRLPAECRG
Nucleotide
Download Length: 426 bp
>NTDB_id=143989 XB05_RS23000 WP_046346033.1 2561493..2561918(-) (pilA) [Xanthomonas arboricola strain 17]
ATGAAGAAGCAACAAGGTTTTACGTTGATCGAACTGATGATCGTGGTAGCGATCATCGCGATCTTGGCTGCTATTGCTCT
GCCTGCGTACCAGGACTACACGGTACGTGCTCGCACGACTGAAGCGCTGGCACGTGCGTCTGCTGCGAAAGTGCTCGTGA
CTGAGAATGCGTCGAATGGTTCTCCACTGGCCCAAGGCTTCGTCAACACTGCGCCGGCAACTCCCAACGTTGCCGCCAAT
GGCGTTGCGGTTAGTGATGTGGGCGTTATCACTGTGACGCTCACTACGGCTGCAGGCGGCGGTACGATCGCGCTGACCCC
GACCCCGGCTCTAGTTGCCGGTACCCCTCCGGTGGGTCCGATTAGCTGGACCTGTACTGGTACAAACACTAACAAGTCGC
GTCTGCCTGCCGAGTGCCGTGGTTAA
ATGAAGAAGCAACAAGGTTTTACGTTGATCGAACTGATGATCGTGGTAGCGATCATCGCGATCTTGGCTGCTATTGCTCT
GCCTGCGTACCAGGACTACACGGTACGTGCTCGCACGACTGAAGCGCTGGCACGTGCGTCTGCTGCGAAAGTGCTCGTGA
CTGAGAATGCGTCGAATGGTTCTCCACTGGCCCAAGGCTTCGTCAACACTGCGCCGGCAACTCCCAACGTTGCCGCCAAT
GGCGTTGCGGTTAGTGATGTGGGCGTTATCACTGTGACGCTCACTACGGCTGCAGGCGGCGGTACGATCGCGCTGACCCC
GACCCCGGCTCTAGTTGCCGGTACCCCTCCGGTGGGTCCGATTAGCTGGACCTGTACTGGTACAAACACTAACAAGTCGC
GTCTGCCTGCCGAGTGCCGTGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
52.5 |
100 |
0.596 |
| pilA2 | Legionella pneumophila str. Paris |
56.643 |
100 |
0.574 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
55.944 |
100 |
0.567 |
| comP | Acinetobacter baylyi ADP1 |
48.387 |
100 |
0.532 |
| pilA/pilA1 | Eikenella corrodens VA1 |
43.506 |
100 |
0.475 |
| pilA | Haemophilus influenzae Rd KW20 |
39.86 |
100 |
0.404 |
| pilA | Haemophilus influenzae 86-028NP |
39.161 |
100 |
0.397 |
| pilE | Neisseria gonorrhoeae MS11 |
35.032 |
100 |
0.39 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
34.416 |
100 |
0.376 |
| pilA | Vibrio cholerae strain A1552 |
37.063 |
100 |
0.376 |
| pilA | Vibrio cholerae C6706 |
37.063 |
100 |
0.376 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.063 |
100 |
0.376 |
| pilA | Pseudomonas aeruginosa PAK |
47.273 |
78.014 |
0.369 |