Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AL533_RS19110 Genome accession   NZ_CP014019
Coordinates   3987567..3987992 (+) Length   141 a.a.
NCBI ID   WP_016803889.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3982567..3992992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS19665 - 3982891..3983076 (+) 186 Protein_3712 hypothetical protein -
  AL533_RS19100 (AL533_19100) - 3984106..3987075 (+) 2970 Protein_3713 PilC/PilY family type IV pilus protein -
  AL533_RS19105 (AL533_19105) pilY2 3987088..3987570 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene
  AL533_RS19110 (AL533_19110) pilE 3987567..3987992 (+) 426 WP_016803889.1 type IV pilin protein Machinery gene
  AL533_RS19115 (AL533_19115) rpsP 3988139..3988390 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  AL533_RS19120 (AL533_19120) rimM 3988410..3988958 (+) 549 WP_004711694.1 ribosome maturation factor RimM -
  AL533_RS19125 (AL533_19125) trmD 3989005..3989760 (+) 756 WP_002051760.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AL533_RS19130 (AL533_19130) rplS 3989976..3990344 (+) 369 WP_002051668.1 50S ribosomal protein L19 -
  AL533_RS19135 (AL533_19135) - 3990396..3991337 (-) 942 WP_080593661.1 lipase family alpha/beta hydrolase -
  AL533_RS19140 (AL533_19140) - 3991452..3992486 (-) 1035 WP_016803887.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15243.46 Da        Isoelectric Point: 7.7765

>NTDB_id=143989 AL533_RS19110 WP_016803889.1 3987567..3987992(+) (pilE) [Acinetobacter nosocomialis strain FDAARGOS_129]
MKNGFTLIEIMVVVAIIAILVAIATPSYLQYVRKGNRTAVQSEMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPVQG
KALYTLVFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=143989 AL533_RS19110 WP_016803889.1 3987567..3987992(+) (pilE) [Acinetobacter nosocomialis strain FDAARGOS_129]
GTGAAGAATGGTTTTACACTGATAGAAATTATGGTTGTGGTGGCAATTATTGCAATTTTGGTAGCGATAGCCACTCCATC
GTATTTACAATATGTTCGTAAAGGGAATCGTACAGCCGTTCAATCTGAAATGATGAATATTGCACAAACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTGTTCAGGGC
AAAGCTTTATATACTTTAGTTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCGGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

95.745

100

0.957
  comF Acinetobacter baylyi ADP1

53.571

99.291

0.532

Multiple sequence alignment