Detailed information NTG0143983

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: XB05_RS10795
• Genome accession: NZ_CP011256
• Coordinates: 2557520..2558914 (+)
• Length: 464 a.a.
• NCBI ID: WP_046343938.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola strain 17
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2552520..2563914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XB05_RS10780 (XB05_10780)	sucD	2553422..2554297 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
XB05_RS10785 (XB05_10785)	sucC	2554322..2555491 (-)	1170	WP_046343936.1	ADP-forming succinate--CoA ligase subunit beta	-
XB05_RS10790 (XB05_10790)	-	2555722..2557335 (+)	1614	WP_046343937.1	HAMP domain-containing sensor histidine kinase	-
XB05_RS10795 (XB05_10795)	pilR	2557520..2558914 (+)	1395	WP_046343938.1	sigma-54 dependent transcriptional regulator	Regulator
XB05_RS10800 (XB05_10800)	pilB	2559214..2560923 (-)	1710	WP_205622422.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XB05_RS22995 (XB05_10805)	-	2560993..2561478 (-)	486	WP_144410817.1	pilin	-
XB05_RS23000 (XB05_10810)	pilA	2561493..2561918 (-)	426	WP_046346033.1	pilin	Machinery gene
XB05_RS10815 (XB05_10815)	pilC	2562322..2563578 (+)	1257	WP_046346034.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50150.51 Da
• Isoelectric Point: 6.5112

>NTDB_id=143983 XB05_RS10795 WP_046343938.1 2557520..2558914(+) (pilR) [Xanthomonas arboricola strain 17]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGASGESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLAHSHGRPIPLLTQSSLDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=143983 XB05_RS10795 WP_046343938.1 2557520..2558914(+) (pilR) [Xanthomonas arboricola strain 17]
ATGAACGAACCGAAAAGTGCACTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCGGCCAACCTGGCCGAAGCCCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTGAACAACCGCGACCGCCCCGCCCCGCCCGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCGATGGAAAGCCTGCGCGCCACCATTGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGTCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAACTGCTGCGCGCAATCCAGGAGAAATCGATACGCCCGGTCGGTGC
CTCCGGCGAGTCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCATAAGAACCTCGGCGACCTGGTCTCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCAGCGGCGACCTGCCG
CAGCTGGCCGCCGCGATCATCGCCCGCCTGGCGCACAGCCACGGCCGCCCGATTCCGCTGCTGACCCAGTCCTCGCTCGA
CGCGCTGGACCAGTACGGATTCCCAGGTAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCTGCCCACGGCGGCCATCGCCTGGCTGCCAGCCCCGGCAGCGCCGCT
GTCGAACCCCGCGAGGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAGAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.043	99.138	0.625
pilR	Acinetobacter baumannii strain A118	48.922	100	0.489