Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XB05_RS10800 Genome accession   NZ_CP011256
Coordinates   2559214..2560923 (-) Length   569 a.a.
NCBI ID   WP_205622422.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain 17     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2554214..2565923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XB05_RS10785 (XB05_10785) sucC 2554322..2555491 (-) 1170 WP_046343936.1 ADP-forming succinate--CoA ligase subunit beta -
  XB05_RS10790 (XB05_10790) - 2555722..2557335 (+) 1614 WP_046343937.1 HAMP domain-containing sensor histidine kinase -
  XB05_RS10795 (XB05_10795) pilR 2557520..2558914 (+) 1395 WP_046343938.1 sigma-54 dependent transcriptional regulator Regulator
  XB05_RS10800 (XB05_10800) pilB 2559214..2560923 (-) 1710 WP_205622422.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XB05_RS22995 (XB05_10805) - 2560993..2561478 (-) 486 WP_144410817.1 pilin -
  XB05_RS23000 (XB05_10810) pilA 2561493..2561918 (-) 426 WP_046346033.1 pilin Machinery gene
  XB05_RS10815 (XB05_10815) pilC 2562322..2563578 (+) 1257 WP_046346034.1 type II secretion system F family protein Machinery gene
  XB05_RS10820 (XB05_10820) - 2563585..2564448 (+) 864 WP_046343941.1 A24 family peptidase -
  XB05_RS10825 (XB05_10825) coaE 2564462..2565073 (+) 612 WP_046343943.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 61764.87 Da        Isoelectric Point: 5.5986

>NTDB_id=143984 XB05_RS10800 WP_205622422.1 2559214..2560923(-) (pilB) [Xanthomonas arboricola strain 17]
MGITGIARRLVQDGAVDEAVARVAMDQAALAKIPLPQWFAEKKLVSAAQLAAANAVEFGMPLMDVSVFDANQNAMKLVSE
ELLQKYQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNAALGSSLGDDDEGMGDL
DVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKLNQRIAA
RLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQKLFLDAIHKP
YGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDIIMVGEIR
DLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSSLPEHALLAEGF
TPAQIAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQSIGIRDLRQSALVKAAHGVTSL
AEINRVTKD

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=143984 XB05_RS10800 WP_205622422.1 2559214..2560923(-) (pilB) [Xanthomonas arboricola strain 17]
GTGGGCATCACTGGAATCGCTCGTAGGCTAGTCCAGGATGGTGCAGTAGATGAAGCCGTAGCGCGTGTGGCAATGGATCA
GGCTGCTTTGGCCAAAATTCCCTTGCCTCAATGGTTCGCTGAGAAAAAGCTAGTTTCAGCCGCACAGCTGGCTGCGGCCA
ATGCGGTCGAGTTCGGCATGCCGCTGATGGACGTATCGGTGTTCGACGCTAACCAGAACGCCATGAAGCTGGTCAGTGAA
GAGTTGCTCCAGAAGTACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTTTGTGGGGGTGAGCAACCCGACCCA
GACTCGGGCGCTGGACGACATCAAGTTTCATACCAACCTGGTGGTCGAGCCGATCCTGGTCGACGAGGACCAGATCCGTC
GCACCTTGGAGCAGTGGCAAGCCAGCAATGCGGCGCTTGGCTCGTCGCTCGGTGACGACGATGAGGGGATGGGCGACCTG
GACGTGTCGGCCGGGGACGAGGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGCCAAGGGCGACGACACGCCGGTGGT
GAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCCTCCGACATCCACTTCGAGCCGTACGAAGACGACT
ATCGGGTGCGCTTGCGGATCGACGGGCTGCTGAAGAACGTGGCCAAGGCGCCGGTGAAGCTGAACCAGCGCATCGCGGCG
CGCCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGACGGGCGCATCAAGCTCAACCTGTCCAA
GACCAAGCAGATCGACTTCCGCGTGAGCACCTTGCCGACCCTGTTCGGCGAGAAGGTGGTGCTGCGTATCCTTGACGGCA
GCGCGGCCAAGCTGGGCATCGAGAAGCTGGGCTACGAGGCTGACCAGCAGAAGCTGTTCCTAGATGCGATCCACAAGCCG
TACGGCATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCCCTGTATACGGCACTGGGTATCCTCAACGA
CGAGACGCGCAACATCTCCACCGCCGAGGACCCGGTGGAAATCCGCCTGCCTGGCGTGAATCAGGTGCAGCAGAACAACA
AGCGCGGCATGACCTTCGCCGCGGCGCTGCGCTCGTTCCTGCGCCAGGACCCGGACATCATCATGGTCGGCGAAATCCGC
GACCTGGAGACGGCCGAGATTGCGATCAAGGCCGCGCAGACAGGCCACATGGTGCTGTCCACGCTGCACACCAACGATGC
GCCGCAGACCATCGCGCGCTTGATGAACATGGGCATTGCGCCTTACAACATTACCTCGTCGGTGACGCTGGTCATCGCGC
AGCGTCTGGCGCGGCGCCTGTGCAACAACTGCAAGCGCAAATCGAGCCTGCCCGAGCATGCATTGCTGGCCGAAGGCTTC
ACGCCGGCGCAGATCGCTGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGACGAGTGCACCGAAGGCTACAAGGGCCG
TACCGGCATCTACCAGGTGATGCCGATGACCGACGAGATCGGCGCGATCGTGCTGGAAGGCGGCAACGCGATGCAGATCG
CCGAGGCGGCGCAGAGTATCGGCATCCGCGACCTGCGCCAGTCGGCGTTGGTCAAGGCCGCGCACGGGGTGACCAGCCTG
GCCGAGATCAATCGGGTGACCAAGGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(192-459)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(40-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.986

99.824

0.559
  pilB Acinetobacter baylyi ADP1

55.458

99.824

0.554
  pilB Legionella pneumophila strain ERS1305867

52.197

100

0.522
  pilB Vibrio cholerae strain A1552

50.091

96.485

0.483
  pilF Neisseria gonorrhoeae MS11

48.415

99.824

0.483
  pilB Vibrio campbellii strain DS40M4

45.694

100

0.457
  pilB Vibrio parahaemolyticus RIMD 2210633

45.893

98.418

0.452
  pilF Thermus thermophilus HB27

40

91.388

0.366
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.238

92.267

0.362

Multiple sequence alignment