Detailed information NTG0139152

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: SA40TW_RS08435
• Genome accession: NZ_CP013182
• Coordinates: 1672658..1673344 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain SA40TW
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1667658..1678344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SA40TW_RS08390 (SA40TW_08030)	rpmA	1668429..1668713 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SA40TW_RS08395 (SA40TW_08035)	-	1668725..1669045 (-)	321	WP_000633690.1	ribosomal-processing cysteine protease Prp	-
SA40TW_RS08400 (SA40TW_08040)	rplU	1669051..1669359 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SA40TW_RS08405 (SA40TW_08045)	mreD	1669595..1670125 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
SA40TW_RS08410 (SA40TW_08050)	mreC	1670125..1670967 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
SA40TW_RS08415 (SA40TW_08055)	-	1671166..1671285 (-)	120	WP_000840603.1	hypothetical protein	-
SA40TW_RS08420 (SA40TW_08060)	-	1671359..1671832 (-)	474	WP_001236737.1	DUF4930 family protein	-
SA40TW_RS08425	-	1671992..1672189 (+)	198	WP_000025835.1	hypothetical protein	-
SA40TW_RS08430 (SA40TW_08065)	-	1672306..1672590 (-)	285	WP_000171863.1	hypothetical protein	-
SA40TW_RS08435 (SA40TW_08070)	ysxA/radC	1672658..1673344 (-)	687	WP_000692876.1	RadC family protein	Machinery gene
SA40TW_RS08440 (SA40TW_08075)	-	1673341..1674048 (-)	708	WP_000261111.1	prepilin peptidase	-
SA40TW_RS08450 (SA40TW_08085)	-	1674316..1675587 (-)	1272	WP_001108341.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
SA40TW_RS08455 (SA40TW_08090)	-	1675600..1678230 (-)	2631	WP_000425338.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=139152 SA40TW_RS08435 WP_000692876.1 1672658..1673344(-) (ysxA/radC) [Staphylococcus aureus strain SA40TW]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=139152 SA40TW_RS08435 WP_000692876.1 1672658..1673344(-) (ysxA/radC) [Staphylococcus aureus strain SA40TW]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377