Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   DYB47_RS01350 Genome accession   NZ_UHFV01000002
Coordinates   234742..235056 (+) Length   104 a.a.
NCBI ID   WP_003080278.1    Uniprot ID   -
Organism   Streptococcus macacae NCTC 11558     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 229742..240056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS01335 (NCTC11558_00270) - 232360..232740 (+) 381 WP_003081066.1 DUF1033 family protein -
  DYB47_RS01340 (NCTC11558_00271) comYA 232834..233775 (+) 942 WP_003079951.1 competence type IV pilus ATPase ComGA Machinery gene
  DYB47_RS01345 (NCTC11558_00272) comYB 233699..234742 (+) 1044 WP_081479323.1 competence type IV pilus assembly protein ComGB Machinery gene
  DYB47_RS01350 (NCTC11558_00273) comYC 234742..235056 (+) 315 WP_003080278.1 competence type IV pilus major pilin ComGC Machinery gene
  DYB47_RS01355 (NCTC11558_00274) comYD 235043..235462 (+) 420 WP_003082165.1 competence type IV pilus minor pilin ComGD Machinery gene
  DYB47_RS01360 comYE 235416..235715 (+) 300 WP_040841662.1 competence type IV pilus minor pilin ComGE Machinery gene
  DYB47_RS01365 (NCTC11558_00276) comYF 235696..236127 (+) 432 WP_003079210.1 competence type IV pilus minor pilin ComGF Machinery gene
  DYB47_RS09855 (NCTC11558_00277) comYG 236108..236485 (+) 378 WP_040841664.1 competence type IV pilus minor pilin ComGG Machinery gene
  DYB47_RS01375 (NCTC11558_00278) comYH 236544..237503 (+) 960 WP_003080448.1 class I SAM-dependent methyltransferase Machinery gene
  DYB47_RS01380 (NCTC11558_00279) - 237558..238754 (+) 1197 WP_003081585.1 acetate kinase -
  DYB47_RS01385 (NCTC11558_00280) - 238981..239658 (+) 678 WP_003080765.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11529.58 Da        Isoelectric Point: 10.2206

>NTDB_id=1171294 DYB47_RS01350 WP_003080278.1 234742..235056(+) (comYC) [Streptococcus macacae NCTC 11558]
MKKLRKISVRAFTLIEMLVVLLIISILLLLFVPNLTKQKDKVKDTGGSAVIKVVESQAELYELNKAGSATLSKLVESGDI
TKEQAKSYNDYYAKHPGQARHVAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=1171294 DYB47_RS01350 WP_003080278.1 234742..235056(+) (comYC) [Streptococcus macacae NCTC 11558]
ATGAAGAAATTAAGAAAAATCAGTGTTAGAGCTTTCACTTTAATTGAGATGTTAGTAGTCCTTCTTATTATCAGTATTCT
TTTGTTGCTCTTTGTGCCTAATCTAACTAAACAAAAAGATAAGGTAAAAGATACTGGTGGTTCTGCTGTCATAAAGGTTG
TTGAAAGTCAGGCTGAACTTTATGAGTTAAATAAAGCAGGTTCAGCTACCCTTTCAAAATTAGTGGAAAGTGGAGATATT
ACAAAAGAACAGGCAAAATCTTATAATGATTACTATGCAAAGCATCCAGGGCAAGCACGTCATGTGGCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

86.538

100

0.865
  comYC Streptococcus mutans UA159

86.538

100

0.865
  comYC Streptococcus gordonii str. Challis substr. CH1

65.714

100

0.663
  comGC/cglC Streptococcus mitis SK321

68.687

95.192

0.654
  comGC/cglC Streptococcus pneumoniae R6

62.745

98.077

0.615
  comGC/cglC Streptococcus pneumoniae Rx1

62.745

98.077

0.615
  comGC/cglC Streptococcus pneumoniae D39

62.745

98.077

0.615
  comGC/cglC Streptococcus pneumoniae TIGR4

62.745

98.077

0.615
  comGC/cglC Streptococcus mitis NCTC 12261

68.478

88.462

0.606
  comGC Lactococcus lactis subsp. cremoris KW2

53.465

97.115

0.519
  comYC Streptococcus suis isolate S10

60.227

84.615

0.51

Multiple sequence alignment