Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   DYB47_RS01360 Genome accession   NZ_UHFV01000002
Coordinates   235416..235715 (+) Length   99 a.a.
NCBI ID   WP_040841662.1    Uniprot ID   -
Organism   Streptococcus macacae NCTC 11558     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230416..240715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS01335 (NCTC11558_00270) - 232360..232740 (+) 381 WP_003081066.1 DUF1033 family protein -
  DYB47_RS01340 (NCTC11558_00271) comYA 232834..233775 (+) 942 WP_003079951.1 competence type IV pilus ATPase ComGA Machinery gene
  DYB47_RS01345 (NCTC11558_00272) comYB 233699..234742 (+) 1044 WP_081479323.1 competence type IV pilus assembly protein ComGB Machinery gene
  DYB47_RS01350 (NCTC11558_00273) comYC 234742..235056 (+) 315 WP_003080278.1 competence type IV pilus major pilin ComGC Machinery gene
  DYB47_RS01355 (NCTC11558_00274) comYD 235043..235462 (+) 420 WP_003082165.1 competence type IV pilus minor pilin ComGD Machinery gene
  DYB47_RS01360 comYE 235416..235715 (+) 300 WP_040841662.1 competence type IV pilus minor pilin ComGE Machinery gene
  DYB47_RS01365 (NCTC11558_00276) comYF 235696..236127 (+) 432 WP_003079210.1 competence type IV pilus minor pilin ComGF Machinery gene
  DYB47_RS09855 (NCTC11558_00277) comYG 236108..236485 (+) 378 WP_040841664.1 competence type IV pilus minor pilin ComGG Machinery gene
  DYB47_RS01375 (NCTC11558_00278) comYH 236544..237503 (+) 960 WP_003080448.1 class I SAM-dependent methyltransferase Machinery gene
  DYB47_RS01380 (NCTC11558_00279) - 237558..238754 (+) 1197 WP_003081585.1 acetate kinase -
  DYB47_RS01385 (NCTC11558_00280) - 238981..239658 (+) 678 WP_003080765.1 CPBP family intramembrane glutamic endopeptidase -
  DYB47_RS01390 (NCTC11558_00281) proC 239749..240519 (-) 771 WP_003080000.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11386.69 Da        Isoelectric Point: 10.9650

>NTDB_id=1171296 DYB47_RS01360 WP_040841662.1 235416..235715(+) (comYE) [Streptococcus macacae NCTC 11558]
MVNIKKRKVRAYILLEALVSLAILVTVTSLILHQLTLNQKRLAKSIQQQEMLNLAIMAVQTKQDKLNLNNNEVQIVRSEN
GLKIYHNQKEVMKVVKKIP

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1171296 DYB47_RS01360 WP_040841662.1 235416..235715(+) (comYE) [Streptococcus macacae NCTC 11558]
GTGGTAAATATAAAAAAGCGGAAAGTAAGAGCTTATATTCTCCTTGAAGCTCTGGTATCTTTAGCAATTCTTGTAACAGT
TACATCTCTGATATTACATCAACTAACATTAAATCAAAAGCGGTTAGCCAAAAGTATACAGCAGCAAGAAATGTTAAATT
TAGCCATTATGGCTGTTCAGACGAAACAAGACAAACTTAATTTAAATAATAATGAGGTGCAAATTGTTCGAAGTGAGAAT
GGGCTTAAGATTTATCATAATCAAAAGGAGGTTATGAAAGTTGTTAAAAAGATCCCTTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

54.639

97.98

0.535
  comYE Streptococcus mutans UA159

54.639

97.98

0.535
  comGE/cglE Streptococcus mitis NCTC 12261

41.758

91.919

0.384
  comGE/cglE Streptococcus pneumoniae Rx1

40.659

91.919

0.374
  comGE/cglE Streptococcus pneumoniae D39

40.659

91.919

0.374
  comGE/cglE Streptococcus pneumoniae R6

40.659

91.919

0.374
  comGE/cglE Streptococcus pneumoniae TIGR4

40.659

91.919

0.374
  comGE/cglE Streptococcus mitis SK321

40.659

91.919

0.374

Multiple sequence alignment