Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   DYB47_RS01355 Genome accession   NZ_UHFV01000002
Coordinates   235043..235462 (+) Length   139 a.a.
NCBI ID   WP_003082165.1    Uniprot ID   G5JWB0
Organism   Streptococcus macacae NCTC 11558     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230043..240462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS01335 (NCTC11558_00270) - 232360..232740 (+) 381 WP_003081066.1 DUF1033 family protein -
  DYB47_RS01340 (NCTC11558_00271) comYA 232834..233775 (+) 942 WP_003079951.1 competence type IV pilus ATPase ComGA Machinery gene
  DYB47_RS01345 (NCTC11558_00272) comYB 233699..234742 (+) 1044 WP_081479323.1 competence type IV pilus assembly protein ComGB Machinery gene
  DYB47_RS01350 (NCTC11558_00273) comYC 234742..235056 (+) 315 WP_003080278.1 competence type IV pilus major pilin ComGC Machinery gene
  DYB47_RS01355 (NCTC11558_00274) comYD 235043..235462 (+) 420 WP_003082165.1 competence type IV pilus minor pilin ComGD Machinery gene
  DYB47_RS01360 comYE 235416..235715 (+) 300 WP_040841662.1 competence type IV pilus minor pilin ComGE Machinery gene
  DYB47_RS01365 (NCTC11558_00276) comYF 235696..236127 (+) 432 WP_003079210.1 competence type IV pilus minor pilin ComGF Machinery gene
  DYB47_RS09855 (NCTC11558_00277) comYG 236108..236485 (+) 378 WP_040841664.1 competence type IV pilus minor pilin ComGG Machinery gene
  DYB47_RS01375 (NCTC11558_00278) comYH 236544..237503 (+) 960 WP_003080448.1 class I SAM-dependent methyltransferase Machinery gene
  DYB47_RS01380 (NCTC11558_00279) - 237558..238754 (+) 1197 WP_003081585.1 acetate kinase -
  DYB47_RS01385 (NCTC11558_00280) - 238981..239658 (+) 678 WP_003080765.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15789.46 Da        Isoelectric Point: 10.4738

>NTDB_id=1171295 DYB47_RS01355 WP_003082165.1 235043..235462(+) (comYD) [Streptococcus macacae NCTC 11558]
MWRIKAFTLLESLITLAVTSFILLSFSGGISRSFAKVEEQLFFLSFEQLYRDTQKLSISTRQMKVLTISNKEISNGSQVL
EVPKNIKTVKKMALEFDQKGGNSSLTKIKFQTPEKIVTYQLYIGSGKYKKAESKSLYSP

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1171295 DYB47_RS01355 WP_003082165.1 235043..235462(+) (comYD) [Streptococcus macacae NCTC 11558]
ATGTGGCGAATTAAAGCCTTTACATTATTAGAGAGTCTTATAACGTTAGCAGTAACGAGTTTTATTCTTTTAAGCTTTTC
TGGAGGAATAAGTCGATCTTTTGCTAAGGTAGAAGAGCAGCTCTTTTTTCTATCCTTTGAGCAGCTTTACCGTGATACAC
AAAAGTTAAGTATAAGCACCAGACAGATGAAAGTGTTAACAATCAGTAATAAAGAAATTTCTAATGGAAGTCAAGTGCTT
GAAGTACCTAAAAATATTAAAACGGTTAAAAAAATGGCCTTAGAATTTGATCAAAAAGGTGGAAACTCCTCACTTACAAA
AATAAAGTTTCAAACACCAGAAAAAATAGTGACTTATCAATTATATATAGGGAGTGGTAAATATAAAAAAGCGGAAAGTA
AGAGCTTATATTCTCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JWB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

65.672

96.403

0.633
  comYD Streptococcus mutans UA159

65.672

96.403

0.633
  comYD Streptococcus gordonii str. Challis substr. CH1

51.969

91.367

0.475
  comGD/cglD Streptococcus mitis NCTC 12261

50.781

92.086

0.468
  comGD/cglD Streptococcus mitis SK321

50.394

91.367

0.46
  comGD/cglD Streptococcus pneumoniae Rx1

49.606

91.367

0.453
  comGD/cglD Streptococcus pneumoniae D39

49.606

91.367

0.453
  comGD/cglD Streptococcus pneumoniae R6

49.606

91.367

0.453
  comGD/cglD Streptococcus pneumoniae TIGR4

48.819

91.367

0.446
  comGD Lactococcus lactis subsp. cremoris KW2

39.535

92.806

0.367

Multiple sequence alignment