Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   U9976_RS00550 Genome accession   NZ_OY986434
Coordinates   113906..114985 (-) Length   359 a.a.
NCBI ID   WP_197157863.1    Uniprot ID   -
Organism   Synechococcus sp. CBW1107 isolate KAC_102     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108906..119985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9976_RS00530 (IFHNHDMJ_00098) - 109464..110009 (+) 546 WP_322757942.1 RNA-binding protein -
  U9976_RS00535 (IFHNHDMJ_00099) dusA 110020..111060 (-) 1041 WP_322757943.1 tRNA dihydrouridine(20/20a) synthase DusA -
  U9976_RS00540 (IFHNHDMJ_00100) - 111067..112335 (+) 1269 WP_322757944.1 NAD(P)/FAD-dependent oxidoreductase -
  U9976_RS00545 (IFHNHDMJ_00101) - 112623..113885 (-) 1263 WP_322757945.1 type II secretion system F family protein -
  U9976_RS00550 (IFHNHDMJ_00102) pilT 113906..114985 (-) 1080 WP_197157863.1 type IV pilus twitching motility protein PilT Machinery gene
  U9976_RS00555 (IFHNHDMJ_00103) - 114995..116905 (-) 1911 WP_322757946.1 GspE/PulE family protein -
  U9976_RS00560 (IFHNHDMJ_00104) grpE 117006..117698 (+) 693 WP_231598115.1 nucleotide exchange factor GrpE -
  U9976_RS00565 (IFHNHDMJ_00105) dnaJ 117698..118819 (+) 1122 WP_197157867.1 molecular chaperone DnaJ -
  U9976_RS00570 (IFHNHDMJ_00106) - 118816..119118 (+) 303 WP_322757947.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39922.83 Da        Isoelectric Point: 5.9369

>NTDB_id=1162512 U9976_RS00550 WP_197157863.1 113906..114985(-) (pilT) [Synechococcus sp. CBW1107 isolate KAC_102]
MDLMIEDLMGKLVEDGGSDLHLSAGMPPYGRFNGQLRPMTETALKEEDCNRLIFMLLNNAQRKQLEQTWELDCSYGLKGV
SRFRVNVYRQRGTYAACLRALGNKIPTLDMLGLPPIVEEMSRIPKGLVLVTGPTGSGKTTTLAAILDHINHTRAEHILTI
EDPIEFTYRSDQSIIHQRELSQDTRSFANALRAALREDPDVILVGEMRDLETIQLAVTAAETGHLVFGTLHTSSASQTVD
RMVDVFPAGQQDQIRVQLSSSLMAVFSQTLCRRWNPKPGQFGRVMAQEIMINTPAISNLVREGKTAQLYSQMQTGASLGM
QTLEKALANLVLSEEVKLEEALSKTAKPEELRRLVDQLS

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1162512 U9976_RS00550 WP_197157863.1 113906..114985(-) (pilT) [Synechococcus sp. CBW1107 isolate KAC_102]
ATGGACCTGATGATCGAGGATCTGATGGGCAAACTGGTTGAAGATGGCGGTAGTGATCTTCACCTCAGTGCCGGGATGCC
TCCTTACGGACGCTTCAATGGCCAGCTTCGTCCGATGACGGAGACTGCGTTGAAGGAGGAAGACTGCAACAGACTGATCT
TCATGTTGCTGAACAACGCCCAGCGCAAGCAACTGGAGCAAACCTGGGAACTGGACTGCTCCTATGGCCTCAAAGGCGTC
TCCCGATTCCGGGTGAACGTCTATCGCCAACGCGGCACCTACGCCGCTTGCCTGAGAGCTCTTGGCAACAAGATTCCCAC
TCTGGACATGCTTGGACTTCCACCGATTGTGGAAGAGATGAGTCGTATCCCCAAAGGGCTGGTACTGGTAACCGGTCCGA
CAGGCTCCGGAAAAACCACCACTCTGGCGGCAATTCTGGATCACATCAACCACACCCGAGCTGAGCATATCCTCACGATC
GAGGATCCGATCGAGTTCACCTACCGTTCCGATCAAAGCATCATCCACCAACGTGAGCTCAGTCAAGACACCCGCAGTTT
CGCCAATGCCCTGCGGGCAGCTCTTCGCGAAGATCCGGACGTGATCCTGGTTGGTGAGATGCGGGACCTGGAGACGATCC
AACTGGCAGTGACCGCAGCCGAAACTGGGCACCTGGTGTTCGGCACCCTGCACACCAGTTCCGCCTCCCAGACGGTGGAT
CGGATGGTGGACGTTTTCCCGGCCGGCCAGCAGGATCAGATCAGGGTGCAACTCAGCAGCAGCCTGATGGCTGTGTTTTC
CCAGACTCTCTGCAGGCGCTGGAATCCGAAACCCGGCCAATTCGGCCGGGTGATGGCTCAGGAGATCATGATCAACACTC
CTGCCATCTCCAATCTGGTGCGCGAAGGAAAAACTGCCCAGCTTTATTCCCAGATGCAGACCGGGGCCAGCCTCGGCATG
CAGACCCTGGAGAAGGCCCTGGCCAATCTGGTGCTTTCCGAGGAGGTGAAACTGGAGGAGGCTCTCAGCAAGACTGCCAA
ACCGGAGGAATTACGCCGCCTGGTGGATCAGCTTTCCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(116-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

52.45

96.657

0.507
  pilT Acinetobacter baumannii strain A118

52.161

96.657

0.504
  pilT Acinetobacter nosocomialis M2

52.161

96.657

0.504
  pilT Acinetobacter baumannii D1279779

52.161

96.657

0.504
  pilT Pseudomonas stutzeri DSM 10701

51.585

96.657

0.499
  pilT Vibrio cholerae strain A1552

52.647

94.708

0.499
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

52.647

94.708

0.499
  pilT Acinetobacter baylyi ADP1

51.297

96.657

0.496
  pilT Legionella pneumophila strain ERS1305867

51.594

96.1

0.496
  pilT Legionella pneumophila strain Lp02

51.594

96.1

0.496
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.296

98.886

0.487
  pilT Neisseria meningitidis 8013

51.064

91.643

0.468
  pilT Neisseria gonorrhoeae MS11

50.76

91.643

0.465
  pilU Pseudomonas stutzeri DSM 10701

39.031

97.772

0.382
  pilU Acinetobacter baylyi ADP1

38.109

97.214

0.37

Multiple sequence alignment