Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QMX76_RS02545 Genome accession   NZ_OX411212
Coordinates   538001..539041 (+) Length   346 a.a.
NCBI ID   WP_005425810.1    Uniprot ID   A0A9X3MNX0
Organism   Vibrio campbellii isolate BF5_0283     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533001..544041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS02510 hemW 533022..534194 (-) 1173 WP_045480178.1 radical SAM family heme chaperone HemW -
  QMX76_RS02515 - 534213..534815 (-) 603 WP_005436525.1 XTP/dITP diphosphatase -
  QMX76_RS02520 - 534921..535352 (-) 432 WP_005425804.1 DUF4426 domain-containing protein -
  QMX76_RS02525 yggU 535412..535702 (-) 291 WP_005425805.1 DUF167 family protein YggU -
  QMX76_RS02530 - 535702..536259 (-) 558 WP_005425806.1 YggT family protein -
  QMX76_RS02535 proC 536313..537131 (-) 819 WP_282248646.1 pyrroline-5-carboxylate reductase -
  QMX76_RS02540 - 537262..537972 (-) 711 WP_282248647.1 YggS family pyridoxal phosphate-dependent enzyme -
  QMX76_RS02545 pilT 538001..539041 (+) 1041 WP_005425810.1 type IV pilus twitching motility protein PilT Machinery gene
  QMX76_RS02550 pilU 539073..540179 (+) 1107 WP_005425812.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  QMX76_RS02555 ruvX 540241..540666 (-) 426 WP_005425820.1 Holliday junction resolvase RuvX -
  QMX76_RS02560 - 540714..541277 (-) 564 WP_010450344.1 YqgE/AlgH family protein -
  QMX76_RS02565 gshB 541405..542355 (-) 951 WP_005425823.1 glutathione synthase -
  QMX76_RS02570 rsmE 542370..543101 (-) 732 WP_045384524.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  QMX76_RS02575 endA 543248..543943 (-) 696 WP_282248648.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38634.12 Da        Isoelectric Point: 6.5043

>NTDB_id=1156267 QMX76_RS02545 WP_005425810.1 538001..539041(+) (pilT) [Vibrio campbellii isolate BF5_0283]
MDITELLDFSVKHNASDLHLSAGVPPMVRIDGDVRKLGIPAFTHQEVHRLVFEIMNDAQRSEFEEKLEVDFSFELHNVGR
FRVNAFNQSRGCAAVFRTIPSSIPTLEELEAPEIFRKIANAEKGLVLVTGPTGSGKSTTLAAIVDYINRNHNKHVLTIED
PIEFVHTNNKCLINQREVHRDTHSFQNALRSALREDPDVILVGEMRDKETISLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGSDKDMVRSMLSESLRSVIAQKLLKRNGGGRIACHEIMMATPAIRNLIREDKVAQMYSIIQTGAAHGMQTMEQNA
RQLMAQGMVSREEVDKKVEIEAQQFS

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1156267 QMX76_RS02545 WP_005425810.1 538001..539041(+) (pilT) [Vibrio campbellii isolate BF5_0283]
ATGGATATCACTGAGTTACTGGATTTTAGTGTAAAACATAATGCTTCGGATCTACATCTTTCTGCAGGTGTACCACCAAT
GGTTCGTATTGATGGTGATGTAAGAAAACTGGGCATTCCAGCGTTTACACACCAAGAAGTGCACCGTTTGGTTTTTGAAA
TCATGAACGATGCGCAGCGCAGTGAATTCGAAGAAAAACTCGAAGTCGACTTTTCATTTGAATTGCATAACGTTGGCCGT
TTTCGTGTCAACGCTTTCAACCAATCTCGCGGTTGTGCGGCGGTGTTCCGTACCATCCCAAGTAGCATTCCAACACTGGA
AGAGCTAGAAGCTCCTGAGATCTTCAGAAAAATCGCCAATGCGGAAAAAGGTTTGGTACTGGTTACTGGCCCAACGGGTT
CTGGTAAATCGACTACCTTGGCTGCCATTGTTGACTACATTAACCGTAATCACAATAAGCACGTCCTAACAATTGAAGAT
CCGATTGAATTTGTTCACACCAACAATAAGTGTCTGATCAACCAACGTGAAGTACACCGTGATACACACAGCTTCCAAAA
CGCGCTACGCAGCGCGCTGCGTGAAGACCCGGATGTGATTCTAGTTGGTGAGATGCGTGATAAAGAAACCATCAGTTTGG
CGCTGACGGCTGCTGAAACGGGCCACCTTGTTTTCGGTACGCTGCACACTAGCTCGGCAGCGAAAACCATCGACCGTATT
ATTGACGTCTTCCCTGGTAGCGACAAAGACATGGTGCGTTCGATGCTGTCAGAATCATTGCGTTCGGTTATCGCGCAAAA
ACTTCTGAAACGTAACGGCGGCGGTCGTATCGCGTGTCATGAAATCATGATGGCAACGCCTGCGATCCGTAACCTTATTC
GTGAAGATAAAGTCGCGCAGATGTATTCGATCATTCAGACTGGTGCGGCGCATGGTATGCAGACCATGGAGCAGAATGCT
CGTCAATTGATGGCGCAAGGCATGGTATCGCGTGAAGAAGTGGATAAGAAAGTTGAAATTGAAGCGCAGCAATTCTCGTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

86.377

99.711

0.861
  pilT Vibrio cholerae strain A1552

86.377

99.711

0.861
  pilT Acinetobacter baumannii D1279779

72.121

95.376

0.688
  pilT Acinetobacter baumannii strain A118

72.121

95.376

0.688
  pilT Acinetobacter nosocomialis M2

71.818

95.376

0.685
  pilT Acinetobacter baylyi ADP1

71.515

95.376

0.682
  pilT Pseudomonas aeruginosa PAK

68.824

98.266

0.676
  pilT Pseudomonas stutzeri DSM 10701

69.027

97.977

0.676
  pilT Legionella pneumophila strain Lp02

67.674

95.665

0.647
  pilT Legionella pneumophila strain ERS1305867

67.674

95.665

0.647
  pilT Neisseria meningitidis 8013

64.118

98.266

0.63
  pilT Neisseria gonorrhoeae MS11

63.824

98.266

0.627
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.857

100

0.503
  pilU Vibrio cholerae strain A1552

41.617

96.532

0.402
  pilU Pseudomonas stutzeri DSM 10701

40.419

96.532

0.39

Multiple sequence alignment