Detailed information NTG1154235

Bioinformatically predicted

Overview

• Name: comP
• Type: Machinery gene
• Locus tag: Q0V31_RS09165
• Genome accession: NZ_OX044366
• Coordinates: 1961236..1961640 (+)
• Length: 134 a.a.
• NCBI ID: WP_298187126.1
• Uniprot ID: -
• Organism: MAG: uncultured Pseudomonas sp. isolate AG_MB4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1956236..1966640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q0V31_RS09145	coaE	1956367..1956981 (-)	615	WP_298187119.1	dephospho-CoA kinase	-
Q0V31_RS09150	pilD	1957216..1958085 (-)	870	WP_298187120.1	A24 family peptidase	Machinery gene
Q0V31_RS09155	pilC	1958089..1959306 (-)	1218	WP_298187121.1	type II secretion system F family protein	Machinery gene
Q0V31_RS09160	pilB	1959310..1961013 (-)	1704	WP_298187123.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q0V31_RS09165	comP	1961236..1961640 (+)	405	WP_298187126.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
Q0V31_RS09170	-	1961799..1963484 (+)	1686	WP_298187129.1	O-antigen ligase family protein	-
Q0V31_RS09175	nadC	1963553..1964401 (-)	849	WP_298187131.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 13827.94 Da
• Isoelectric Point: 8.1087

>NTDB_id=1154235 Q0V31_RS09165 WP_298187126.1 1961236..1961640(+) (comP) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
MKAQMQKGFTLIELMIVVAIIGILAAVALPAYQDYTNKAKVSEVVLAASSARTCVTEIVQSTGASNLDTCANSFTATKYV
GTLAVNATSGVVTATSTGLSETATITLTPTISGNTISQWACTGTPTKWMPGSCR

Nucleotide

• Length: 405 bp

>NTDB_id=1154235 Q0V31_RS09165 WP_298187126.1 1961236..1961640(+) (comP) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
ATGAAAGCTCAAATGCAGAAAGGCTTTACCTTGATTGAATTGATGATCGTGGTTGCGATTATCGGTATTTTGGCTGCAGT
TGCGCTGCCGGCTTATCAGGATTACACCAACAAAGCAAAAGTTTCTGAGGTTGTATTGGCTGCTAGCTCTGCGCGTACAT
GTGTGACTGAAATTGTTCAGTCTACAGGGGCTTCCAACTTGGATACTTGCGCGAACAGTTTCACTGCGACTAAATATGTT
GGTACTTTGGCTGTAAATGCAACTTCGGGTGTTGTGACTGCTACAAGTACGGGTCTCAGCGAGACAGCTACAATTACACT
TACCCCAACTATCTCGGGTAACACTATCAGTCAGTGGGCTTGTACTGGTACACCGACAAAGTGGATGCCTGGTTCTTGCC
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (6-29)

• Pilin (bacterial filament) (Pilin) (38-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comP	Acinetobacter baylyi ADP1	45.205	100	0.493
pilA2	Legionella pneumophila str. Paris	47.761	100	0.478
pilA2	Legionella pneumophila strain ERS1305867	47.761	100	0.478
pilE	Neisseria gonorrhoeae strain FA1090	45.113	99.254	0.448
pilE	Neisseria gonorrhoeae MS11	42.647	100	0.433
pilA/pilA1	Eikenella corrodens VA1	37.908	100	0.433
pilA	Ralstonia pseudosolanacearum GMI1000	41.985	97.761	0.41
pilA/pilAI	Pseudomonas stutzeri DSM 10701	38.732	100	0.41
pilA	Acinetobacter baumannii strain A118	38.686	100	0.396
pilA	Haemophilus influenzae 86-028NP	38.519	100	0.388
pilA	Glaesserella parasuis strain SC1401	36.232	100	0.373
pilA	Pseudomonas aeruginosa PAK	43.103	86.567	0.373