Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | Q0V31_RS09160 | Genome accession | NZ_OX044366 |
| Coordinates | 1959310..1961013 (-) | Length | 567 a.a. |
| NCBI ID | WP_298187123.1 | Uniprot ID | - |
| Organism | MAG: uncultured Pseudomonas sp. isolate AG_MB4 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1954310..1966013
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q0V31_RS09125 | - | 1954451..1955080 (-) | 630 | WP_298187113.1 | DUF1780 domain-containing protein | - |
| Q0V31_RS09130 | - | 1955224..1955913 (+) | 690 | WP_298187115.1 | energy-coupling factor ABC transporter permease | - |
| Q0V31_RS09135 | - | 1955951..1956163 (+) | 213 | Protein_1792 | hypothetical protein | - |
| Q0V31_RS09140 | yacG | 1956170..1956370 (-) | 201 | WP_298187117.1 | DNA gyrase inhibitor YacG | - |
| Q0V31_RS09145 | coaE | 1956367..1956981 (-) | 615 | WP_298187119.1 | dephospho-CoA kinase | - |
| Q0V31_RS09150 | pilD | 1957216..1958085 (-) | 870 | WP_298187120.1 | A24 family peptidase | Machinery gene |
| Q0V31_RS09155 | pilC | 1958089..1959306 (-) | 1218 | WP_298187121.1 | type II secretion system F family protein | Machinery gene |
| Q0V31_RS09160 | pilB | 1959310..1961013 (-) | 1704 | WP_298187123.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Q0V31_RS09165 | comP | 1961236..1961640 (+) | 405 | WP_298187126.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| Q0V31_RS09170 | - | 1961799..1963484 (+) | 1686 | WP_298187129.1 | O-antigen ligase family protein | - |
| Q0V31_RS09175 | nadC | 1963553..1964401 (-) | 849 | WP_298187131.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 567 a.a. Molecular weight: 62452.52 Da Isoelectric Point: 5.3430
>NTDB_id=1154234 Q0V31_RS09160 WP_298187123.1 1959310..1961013(-) (pilB) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
MNDSVSLTGLARQMVLAELLDERAAQQAQAQAQRNKLSLVTYLVQNKLVKSRVLAELASDQFGVSFVDLNALDKESLPKD
LVTEKLVRQHRVLPLWRRGNKLFVAVSDPTNHQAITDIQFSTGMNTEAILVEDDKLGEAIDKFFDSAASGMEDLADIDLD
SLDVEAVNDETEAAGDGNSADDAPVVRFVNKMLLDAIKKGSSDLHFEPYEKTYRVRFRTDGILQEIARPPIQLSPRISAR
LKVMAGLDISERRKPQDGRIKMRISKTKSIDFRVSTCPTLWGEKIVMRILDSASAQMGIDALGYEESQKELYMTALKQPQ
GMILVTGPTGSGKTVSLYTGLNILNTVDVNISTAEDPVEINLEGINQVNVNPKQGMDFTAALKSFLRQDPDIIMVGEIRD
LDTASIAIKAAQTGHMVMSTLHTNSAAETLTRLRNMGVPSFNIATSVNLIIAQRLARKLCSTCKKEIQIPREALLEEGFP
ADKIGTFKTYEPVGCENCNGGYKGRVGIYEVVKNTPALQRIIMEEGNSIDISIQMRKDGFNDLRTSALLKAMQGVTSLAE
VNRVTKD
MNDSVSLTGLARQMVLAELLDERAAQQAQAQAQRNKLSLVTYLVQNKLVKSRVLAELASDQFGVSFVDLNALDKESLPKD
LVTEKLVRQHRVLPLWRRGNKLFVAVSDPTNHQAITDIQFSTGMNTEAILVEDDKLGEAIDKFFDSAASGMEDLADIDLD
SLDVEAVNDETEAAGDGNSADDAPVVRFVNKMLLDAIKKGSSDLHFEPYEKTYRVRFRTDGILQEIARPPIQLSPRISAR
LKVMAGLDISERRKPQDGRIKMRISKTKSIDFRVSTCPTLWGEKIVMRILDSASAQMGIDALGYEESQKELYMTALKQPQ
GMILVTGPTGSGKTVSLYTGLNILNTVDVNISTAEDPVEINLEGINQVNVNPKQGMDFTAALKSFLRQDPDIIMVGEIRD
LDTASIAIKAAQTGHMVMSTLHTNSAAETLTRLRNMGVPSFNIATSVNLIIAQRLARKLCSTCKKEIQIPREALLEEGFP
ADKIGTFKTYEPVGCENCNGGYKGRVGIYEVVKNTPALQRIIMEEGNSIDISIQMRKDGFNDLRTSALLKAMQGVTSLAE
VNRVTKD
Nucleotide
Download Length: 1704 bp
>NTDB_id=1154234 Q0V31_RS09160 WP_298187123.1 1959310..1961013(-) (pilB) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
ATGAACGATAGCGTGTCCCTTACCGGCCTGGCCCGGCAGATGGTGTTGGCGGAACTGCTGGATGAAAGAGCCGCGCAGCA
GGCGCAAGCCCAGGCGCAGCGCAACAAGCTGTCGCTGGTCACCTACTTGGTACAAAACAAACTGGTTAAAAGCCGTGTAC
TGGCCGAGCTGGCCAGCGATCAGTTCGGCGTGTCTTTTGTCGACCTAAATGCCCTCGATAAAGAAAGCCTGCCTAAAGAT
CTGGTGACCGAAAAGCTGGTGCGCCAGCACCGCGTGCTGCCGTTATGGCGTCGCGGCAACAAGCTGTTTGTCGCGGTCTC
CGACCCCACCAACCACCAAGCTATTACCGACATTCAATTCAGCACCGGGATGAACACCGAAGCCATTTTGGTTGAGGATG
ACAAGCTCGGCGAGGCCATCGATAAGTTTTTCGACTCCGCCGCCAGCGGCATGGAAGACCTGGCCGACATCGACCTCGAC
AGCCTGGATGTCGAGGCAGTTAATGACGAAACCGAAGCGGCGGGCGACGGCAATTCGGCCGACGATGCCCCAGTGGTGCG
TTTCGTCAACAAAATGCTGCTGGATGCGATTAAAAAAGGCTCATCCGACCTGCACTTCGAGCCATACGAGAAAACTTACC
GCGTGCGCTTTCGCACCGACGGCATCCTGCAGGAGATCGCGCGACCGCCGATCCAGCTTTCACCACGCATCTCCGCGCGC
TTGAAAGTGATGGCCGGCCTGGATATTTCCGAGCGGCGCAAGCCGCAGGACGGGCGTATCAAGATGCGTATCTCGAAAAC
CAAATCCATCGACTTTCGCGTCAGCACCTGCCCAACGCTGTGGGGCGAGAAAATCGTGATGCGGATTCTTGACTCCGCCA
GCGCACAAATGGGCATCGACGCTTTGGGTTATGAGGAGTCGCAAAAAGAGCTGTACATGACGGCGCTCAAGCAGCCGCAG
GGCATGATTCTGGTGACTGGCCCAACCGGCTCCGGCAAAACCGTATCGTTGTATACCGGCTTGAACATCCTCAATACCGT
TGACGTGAACATTTCCACCGCCGAAGACCCGGTGGAAATCAACCTGGAAGGCATCAACCAGGTCAACGTCAACCCCAAGC
AGGGCATGGACTTCACCGCCGCACTGAAGTCCTTCCTGCGTCAGGACCCGGACATCATCATGGTCGGCGAGATTCGTGAC
CTGGATACCGCCTCCATCGCCATCAAGGCTGCGCAAACCGGGCACATGGTGATGTCGACGCTGCACACTAACAGCGCGGC
GGAAACCTTGACCCGCCTTCGCAATATGGGTGTGCCGTCGTTCAACATCGCCACCTCGGTCAACCTGATCATCGCCCAGC
GTCTTGCGCGCAAGCTGTGCAGTACCTGTAAGAAAGAAATCCAGATCCCCCGCGAAGCCCTACTTGAGGAAGGTTTCCCG
GCTGACAAGATCGGCACCTTCAAGACTTACGAGCCCGTCGGCTGTGAAAATTGTAATGGCGGTTACAAAGGCCGTGTCGG
GATTTATGAAGTGGTTAAAAACACGCCGGCGCTGCAGCGGATTATCATGGAGGAAGGCAACTCGATTGATATCTCCATCC
AGATGCGCAAAGACGGCTTTAATGATCTGCGAACTTCAGCTTTGCTGAAGGCCATGCAGGGCGTGACCAGCCTCGCTGAA
GTGAACCGCGTAACAAAGGACTAA
ATGAACGATAGCGTGTCCCTTACCGGCCTGGCCCGGCAGATGGTGTTGGCGGAACTGCTGGATGAAAGAGCCGCGCAGCA
GGCGCAAGCCCAGGCGCAGCGCAACAAGCTGTCGCTGGTCACCTACTTGGTACAAAACAAACTGGTTAAAAGCCGTGTAC
TGGCCGAGCTGGCCAGCGATCAGTTCGGCGTGTCTTTTGTCGACCTAAATGCCCTCGATAAAGAAAGCCTGCCTAAAGAT
CTGGTGACCGAAAAGCTGGTGCGCCAGCACCGCGTGCTGCCGTTATGGCGTCGCGGCAACAAGCTGTTTGTCGCGGTCTC
CGACCCCACCAACCACCAAGCTATTACCGACATTCAATTCAGCACCGGGATGAACACCGAAGCCATTTTGGTTGAGGATG
ACAAGCTCGGCGAGGCCATCGATAAGTTTTTCGACTCCGCCGCCAGCGGCATGGAAGACCTGGCCGACATCGACCTCGAC
AGCCTGGATGTCGAGGCAGTTAATGACGAAACCGAAGCGGCGGGCGACGGCAATTCGGCCGACGATGCCCCAGTGGTGCG
TTTCGTCAACAAAATGCTGCTGGATGCGATTAAAAAAGGCTCATCCGACCTGCACTTCGAGCCATACGAGAAAACTTACC
GCGTGCGCTTTCGCACCGACGGCATCCTGCAGGAGATCGCGCGACCGCCGATCCAGCTTTCACCACGCATCTCCGCGCGC
TTGAAAGTGATGGCCGGCCTGGATATTTCCGAGCGGCGCAAGCCGCAGGACGGGCGTATCAAGATGCGTATCTCGAAAAC
CAAATCCATCGACTTTCGCGTCAGCACCTGCCCAACGCTGTGGGGCGAGAAAATCGTGATGCGGATTCTTGACTCCGCCA
GCGCACAAATGGGCATCGACGCTTTGGGTTATGAGGAGTCGCAAAAAGAGCTGTACATGACGGCGCTCAAGCAGCCGCAG
GGCATGATTCTGGTGACTGGCCCAACCGGCTCCGGCAAAACCGTATCGTTGTATACCGGCTTGAACATCCTCAATACCGT
TGACGTGAACATTTCCACCGCCGAAGACCCGGTGGAAATCAACCTGGAAGGCATCAACCAGGTCAACGTCAACCCCAAGC
AGGGCATGGACTTCACCGCCGCACTGAAGTCCTTCCTGCGTCAGGACCCGGACATCATCATGGTCGGCGAGATTCGTGAC
CTGGATACCGCCTCCATCGCCATCAAGGCTGCGCAAACCGGGCACATGGTGATGTCGACGCTGCACACTAACAGCGCGGC
GGAAACCTTGACCCGCCTTCGCAATATGGGTGTGCCGTCGTTCAACATCGCCACCTCGGTCAACCTGATCATCGCCCAGC
GTCTTGCGCGCAAGCTGTGCAGTACCTGTAAGAAAGAAATCCAGATCCCCCGCGAAGCCCTACTTGAGGAAGGTTTCCCG
GCTGACAAGATCGGCACCTTCAAGACTTACGAGCCCGTCGGCTGTGAAAATTGTAATGGCGGTTACAAAGGCCGTGTCGG
GATTTATGAAGTGGTTAAAAACACGCCGGCGCTGCAGCGGATTATCATGGAGGAAGGCAACTCGATTGATATCTCCATCC
AGATGCGCAAAGACGGCTTTAATGATCTGCGAACTTCAGCTTTGCTGAAGGCCATGCAGGGCGTGACCAGCCTCGCTGAA
GTGAACCGCGTAACAAAGGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
58.947 |
100 |
0.593 |
| pilB | Acinetobacter baylyi ADP1 |
57.904 |
99.295 |
0.575 |
| pilB | Legionella pneumophila strain ERS1305867 |
54.513 |
99.647 |
0.543 |
| pilB | Vibrio cholerae strain A1552 |
50.446 |
98.942 |
0.499 |
| pilB | Vibrio campbellii strain DS40M4 |
50.178 |
99.118 |
0.497 |
| pilF | Neisseria gonorrhoeae MS11 |
49.378 |
99.295 |
0.49 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
51.206 |
95.062 |
0.487 |
| pilF | Thermus thermophilus HB27 |
36.491 |
100 |
0.367 |