Detailed information NTG1154232

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q0V31_RS09150
• Genome accession: NZ_OX044366
• Coordinates: 1957216..1958085 (-)
• Length: 289 a.a.
• NCBI ID: WP_298187120.1
• Uniprot ID: -
• Organism: MAG: uncultured Pseudomonas sp. isolate AG_MB4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1952216..1963085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q0V31_RS09110	-	1952340..1953641 (-)	1302	WP_298187109.1	NAD(P)/FAD-dependent oxidoreductase	-
Q0V31_RS09115	-	1953705..1953878 (-)	174	WP_298187110.1	DUF3094 family protein	-
Q0V31_RS09120	-	1953963..1954454 (-)	492	WP_298187111.1	MOSC domain-containing protein	-
Q0V31_RS09125	-	1954451..1955080 (-)	630	WP_298187113.1	DUF1780 domain-containing protein	-
Q0V31_RS09130	-	1955224..1955913 (+)	690	WP_298187115.1	energy-coupling factor ABC transporter permease	-
Q0V31_RS09135	-	1955951..1956163 (+)	213	Protein_1792	hypothetical protein	-
Q0V31_RS09140	yacG	1956170..1956370 (-)	201	WP_298187117.1	DNA gyrase inhibitor YacG	-
Q0V31_RS09145	coaE	1956367..1956981 (-)	615	WP_298187119.1	dephospho-CoA kinase	-
Q0V31_RS09150	pilD	1957216..1958085 (-)	870	WP_298187120.1	A24 family peptidase	Machinery gene
Q0V31_RS09155	pilC	1958089..1959306 (-)	1218	WP_298187121.1	type II secretion system F family protein	Machinery gene
Q0V31_RS09160	pilB	1959310..1961013 (-)	1704	WP_298187123.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q0V31_RS09165	comP	1961236..1961640 (+)	405	WP_298187126.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32013.06 Da
• Isoelectric Point: 6.3225

>NTDB_id=1154232 Q0V31_RS09150 WP_298187120.1 1957216..1958085(-) (pilD) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
MSVIDFLASHVLAFVLCALLIGLLVGSFLNVVIFRLPKMMQRDWREQAREILELPGEPETATFNLVLPNSQCPHCAHEIK
PWENIPVISYLFLRGKCSSCKAPISLRYPLIELTCGLLSAYIAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIANSFGLFTSLEDALWGAVAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGLIMLRLRNAETSTPIPFGPYLAIAGWIALLWGERITSSYLQIAGF

Nucleotide

• Length: 870 bp

>NTDB_id=1154232 Q0V31_RS09150 WP_298187120.1 1957216..1958085(-) (pilD) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
ATGTCAGTCATCGATTTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTATGCGCGCTACTCATTGGCTTACTGGTCGGTAG
TTTTCTCAACGTAGTAATTTTCCGCCTGCCGAAAATGATGCAGCGCGACTGGCGCGAGCAAGCGCGTGAGATATTAGAGC
TGCCTGGCGAGCCTGAAACAGCCACATTCAACCTGGTACTGCCCAACTCGCAATGCCCGCACTGCGCCCACGAAATAAAG
CCTTGGGAGAATATCCCGGTTATTAGCTATCTGTTTCTGCGCGGCAAATGCTCCAGCTGTAAAGCACCTATCAGCCTGCG
TTACCCGCTGATTGAGCTGACCTGCGGCTTGCTCTCGGCCTATATCGCCTGGCACTTCGGCTTCACCTGGCAGGCCGGGG
CGATGCTGCTGTTGACCTGGGGTTTGTTGGCGATGAGCCTGATCGACGCCGACCACCAGTTACTGCCGGACTCACTGGTG
CTACCGCTACTCTGGCTCGGTTTAATTGCCAATAGCTTTGGCCTGTTTACCAGCCTGGAAGATGCACTCTGGGGCGCGGT
TGCTGGCTACCTAAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCGTGGGGCGGCTGGCAAGTTTTACCGCTGACAATTTTGCTGTCTTCGCTCGTCGGC
GCGGTACTTGGGCTAATCATGTTGCGCCTGCGCAACGCCGAAACCAGCACACCGATCCCCTTCGGCCCTTACTTGGCAAT
TGCTGGCTGGATTGCTTTGCTCTGGGGCGAGCGGATCACCTCCAGCTACCTGCAGATTGCTGGTTTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.509	94.464	0.543
pilD	Vibrio campbellii strain DS40M4	55.678	94.464	0.526
pilD	Acinetobacter baumannii D1279779	51.579	98.616	0.509
pilD	Acinetobacter nosocomialis M2	50.877	98.616	0.502
pilD	Neisseria gonorrhoeae MS11	52.549	88.235	0.464