Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q0V31_RS09155 Genome accession   NZ_OX044366
Coordinates   1958089..1959306 (-) Length   405 a.a.
NCBI ID   WP_298187121.1    Uniprot ID   -
Organism   MAG: uncultured Pseudomonas sp. isolate AG_MB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953089..1964306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0V31_RS09115 - 1953705..1953878 (-) 174 WP_298187110.1 DUF3094 family protein -
  Q0V31_RS09120 - 1953963..1954454 (-) 492 WP_298187111.1 MOSC domain-containing protein -
  Q0V31_RS09125 - 1954451..1955080 (-) 630 WP_298187113.1 DUF1780 domain-containing protein -
  Q0V31_RS09130 - 1955224..1955913 (+) 690 WP_298187115.1 energy-coupling factor ABC transporter permease -
  Q0V31_RS09135 - 1955951..1956163 (+) 213 Protein_1792 hypothetical protein -
  Q0V31_RS09140 yacG 1956170..1956370 (-) 201 WP_298187117.1 DNA gyrase inhibitor YacG -
  Q0V31_RS09145 coaE 1956367..1956981 (-) 615 WP_298187119.1 dephospho-CoA kinase -
  Q0V31_RS09150 pilD 1957216..1958085 (-) 870 WP_298187120.1 A24 family peptidase Machinery gene
  Q0V31_RS09155 pilC 1958089..1959306 (-) 1218 WP_298187121.1 type II secretion system F family protein Machinery gene
  Q0V31_RS09160 pilB 1959310..1961013 (-) 1704 WP_298187123.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q0V31_RS09165 comP 1961236..1961640 (+) 405 WP_298187126.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  Q0V31_RS09170 - 1961799..1963484 (+) 1686 WP_298187129.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43888.58 Da        Isoelectric Point: 9.7774

>NTDB_id=1154233 Q0V31_RS09155 WP_298187121.1 1958089..1959306(-) (pilC) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
MAVKALKTSTFAWEGTNKQGAKIKGEVSGQNPALVKAQLRKQGINPTKVRKKSMSLLSAGKKIKPMDIALFARQMATMMK
AGVPLLQSFEIIAEGVDNPNMRKLIDDIKQHVAAGNSFAASLRTRPEHFDDLFCNLVDAGEQAGALEDLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAVIVSAILLIKVVPQFESVFANFGAELPAFTQFVIGISQALQEWWFIILIGFFAAGFSFV
EAKKRSEKLRNWLDRTALKAPIVGDIIYKSSVARYARTLATTFAAGVPLVEALDSVAGATGNIVFKNAVNKIKQDVSAGM
QLNFSMRSTEVFPSMAIQMTAIGEESGALDMMLDKVASYYEAEVDNAVDGLTALMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1154233 Q0V31_RS09155 WP_298187121.1 1958089..1959306(-) (pilC) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
ATGGCCGTTAAAGCACTAAAAACCAGCACCTTTGCCTGGGAAGGCACCAATAAGCAGGGTGCCAAAATAAAAGGTGAAGT
CAGCGGCCAAAACCCCGCATTGGTAAAGGCACAACTGCGCAAGCAGGGCATCAACCCAACCAAAGTCCGTAAAAAATCGA
TGTCCCTGCTCAGCGCAGGGAAAAAGATCAAACCAATGGACATCGCGCTGTTTGCCCGGCAAATGGCGACGATGATGAAG
GCTGGTGTACCCCTGCTGCAGTCGTTTGAAATTATCGCAGAGGGCGTTGACAACCCGAATATGCGCAAGCTGATTGATGA
CATCAAACAGCATGTGGCGGCGGGTAATAGTTTTGCTGCTTCGCTGCGCACACGCCCAGAGCATTTTGATGACCTGTTCT
GCAACCTGGTAGATGCAGGCGAGCAAGCCGGCGCACTGGAAGACCTACTGGACCGAGTAGCAACCTACAAAGAAAAGACC
GAAGCGCTTAAAGCTAAAATCAAAAAAGCCATGAACTACCCCATCGCAGTAGTGCTGGTGGCGGTGATTGTTTCAGCTAT
TTTGTTGATCAAAGTAGTGCCGCAATTCGAATCTGTATTTGCCAACTTTGGCGCTGAGCTACCTGCCTTTACTCAGTTTG
TAATCGGCATTTCCCAAGCCTTGCAAGAGTGGTGGTTTATCATCCTGATTGGTTTTTTCGCCGCAGGTTTTTCTTTTGTT
GAGGCAAAAAAGCGCTCAGAGAAACTCCGTAACTGGCTCGACCGCACAGCCCTCAAAGCCCCGATTGTTGGCGACATCAT
TTATAAATCATCAGTGGCTCGCTACGCCCGTACCCTGGCAACCACCTTTGCCGCCGGCGTGCCACTTGTGGAAGCCTTGG
ACTCAGTCGCCGGAGCAACCGGTAATATCGTATTCAAGAATGCCGTGAATAAAATCAAACAGGATGTTAGCGCCGGTATG
CAGCTGAACTTCTCCATGCGCAGCACGGAAGTCTTCCCCTCGATGGCCATCCAAATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACATGATGCTGGATAAAGTCGCCAGTTATTACGAGGCTGAGGTCGACAATGCCGTCGATGGTTTGACCGCCC
TGATGGAGCCGCTAATTATGTCGGTACTCGGCGTACTGGTCGGCGGTCTGATCATTGCCATGTACTTGCCTATTTTCCAA
CTGGGTGCTGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.753

100

0.798
  pilC Acinetobacter baumannii D1279779

61.275

100

0.617
  pilC Acinetobacter baylyi ADP1

60.202

98.025

0.59
  pilC Legionella pneumophila strain ERS1305867

53.652

98.025

0.526
  pilG Neisseria gonorrhoeae MS11

45.025

99.259

0.447
  pilG Neisseria meningitidis 44/76-A

45.025

99.259

0.447
  pilC Vibrio cholerae strain A1552

42.752

100

0.43
  pilC Vibrio campbellii strain DS40M4

41.414

97.778

0.405

Multiple sequence alignment