Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   M942_RS05560 Genome accession   NZ_CP006580
Coordinates   1090751..1091776 (+) Length   341 a.a.
NCBI ID   WP_020883694.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain P101     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1085751..1096776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M942_RS05520 (M942_05545) - 1085832..1086158 (+) 327 WP_020883688.1 YggL family protein -
  M942_RS05525 (M942_05550) - 1086215..1086931 (+) 717 WP_020883689.1 DUF2884 domain-containing protein -
  M942_RS05530 (M942_05555) - 1086993..1087355 (-) 363 WP_025203255.1 endonuclease domain-containing protein -
  M942_RS05535 (M942_05560) hemW 1087419..1088561 (-) 1143 WP_025203256.1 radical SAM family heme chaperone HemW -
  M942_RS05540 (M942_05565) - 1088554..1089147 (-) 594 WP_025203257.1 XTP/dITP diphosphatase -
  M942_RS05545 (M942_05570) yggU 1089151..1089447 (-) 297 WP_025203258.1 DUF167 family protein YggU -
  M942_RS05550 (M942_05575) - 1089444..1090010 (-) 567 WP_014171570.1 YggT family protein -
  M942_RS05555 (M942_05580) - 1090032..1090733 (-) 702 WP_025203259.1 YggS family pyridoxal phosphate-dependent enzyme -
  M942_RS05560 (M942_05585) pilT 1090751..1091776 (+) 1026 WP_020883694.1 type IV pilus twitching motility protein PilT Machinery gene
  M942_RS05565 (M942_05590) ruvX 1091742..1092158 (-) 417 WP_014171567.1 Holliday junction resolvase RuvX -
  M942_RS05570 (M942_05595) - 1092158..1092718 (-) 561 WP_020883695.1 YqgE/AlgH family protein -
  M942_RS05575 (M942_05600) gshB 1092805..1093752 (-) 948 WP_020883696.1 glutathione synthase -
  M942_RS05580 (M942_05605) rsmE 1093792..1094523 (-) 732 WP_020883697.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  M942_RS05585 (M942_05610) endA 1094576..1095283 (-) 708 WP_020883698.1 deoxyribonuclease I -
  M942_RS05590 (M942_05615) - 1095378..1095875 (-) 498 WP_025203260.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37103.14 Da        Isoelectric Point: 6.0946

>NTDB_id=113186 M942_RS05560 WP_020883694.1 1090751..1091776(+) (pilT) [Enterobacter ludwigii strain P101]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRAGRLEPAPFPPPEVDTLLKAWLNDEQQGTWWANGQVDFAVTLAGNQRLRG
SAFKQTSGVSMTLRLLPGVCPQLSALGVPRVVPELLSSDNGLILVTGATGSGKSTTLAAMVDFLNHHTDGHILTLEDPVE
FLYQSERCLIQQREIGQHSPSFADALRGALRQDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLLPDAQGGRVALYELLVNTPAAANLIREGKTWQLPGIIQTGQQAGMQNFDQSLAER
RAQGQLQAPALNNPVRNSFRE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=113186 M942_RS05560 WP_020883694.1 1090751..1091776(+) (pilT) [Enterobacter ludwigii strain P101]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAATGTCTCCGATCTACACCTGTGCAGTGATTCACCACCGCG
CTGGCGCAGAGCAGGTCGTCTTGAACCCGCGCCGTTTCCGCCTCCCGAAGTCGATACGCTATTAAAAGCGTGGCTCAACG
ATGAACAGCAGGGAACGTGGTGGGCGAACGGGCAGGTGGATTTTGCCGTCACCCTGGCGGGCAATCAGCGCCTGCGCGGA
AGCGCGTTTAAACAGACAAGCGGCGTCTCAATGACGCTGCGGCTGTTGCCCGGGGTCTGCCCGCAACTCTCCGCGTTGGG
GGTGCCACGGGTTGTTCCTGAGCTGTTATCCAGTGACAACGGGCTAATTCTGGTCACCGGGGCAACCGGCAGCGGTAAGT
CCACTACGCTGGCAGCGATGGTGGATTTTCTTAATCACCATACTGACGGGCATATTCTGACGCTCGAAGACCCCGTGGAG
TTTCTGTACCAGAGCGAACGCTGCCTGATCCAGCAGCGCGAGATTGGCCAACACAGCCCGTCATTTGCCGACGCGCTGCG
CGGGGCGTTACGCCAGGATCCTGATGTCATACTGCTGGGAGAGCTGCGCGACAGTGAAACAATCCGCCTCGCGCTGACGG
CGGCGGAAACCGGACATCTGGTGCTCGCGACACTGCATACCCGCGGGGCAGCGCAGGCGATTGAGCGGCTGGTCGATACG
TTTCCGGCGCAGGAGAAAGATCCGGTGCGCAATCAGCTGGCCGGCAGCCTGCGGGCGGTGCTGGCGCAAAAGCTCCTCCC
CGATGCGCAGGGCGGGCGCGTGGCGCTTTATGAGCTGCTGGTGAATACTCCGGCGGCGGCGAATCTCATTCGCGAAGGAA
AAACGTGGCAATTGCCCGGTATTATTCAAACCGGCCAGCAGGCGGGGATGCAGAACTTTGACCAGAGCCTGGCTGAAAGA
CGGGCGCAGGGGCAACTCCAGGCCCCGGCGCTCAATAACCCTGTTCGAAATAGCTTTCGAGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(112-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.112

99.12

0.487
  pilT Vibrio cholerae strain A1552

49.112

99.12

0.487
  pilT Neisseria meningitidis 8013

48.348

97.654

0.472
  pilT Neisseria gonorrhoeae MS11

46.784

100

0.469
  pilT Legionella pneumophila strain ERS1305867

49.068

94.428

0.463
  pilT Legionella pneumophila strain Lp02

49.068

94.428

0.463
  pilT Acinetobacter baylyi ADP1

46.988

97.361

0.457
  pilT Pseudomonas stutzeri DSM 10701

47.706

95.894

0.457
  pilT Acinetobacter baumannii strain A118

47.401

95.894

0.455
  pilT Acinetobacter baumannii D1279779

47.401

95.894

0.455
  pilT Pseudomonas aeruginosa PAK

47.401

95.894

0.455
  pilT Acinetobacter nosocomialis M2

47.812

93.842

0.449
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.41

94.428

0.419
  pilU Pseudomonas stutzeri DSM 10701

40.303

96.774

0.39
  pilU Vibrio cholerae strain A1552

39.441

94.428

0.372

Multiple sequence alignment