Detailed information
Bioinformatically predicted
Overview
| Name | comGC/cglC | Type | Machinery gene |
| Locus tag | E0F31_RS10065 | Genome accession | NZ_LR216064 |
| Coordinates | 1863915..1864241 (-) | Length | 108 a.a. |
| NCBI ID | WP_000738632.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1858915..1869241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0F31_RS10025 (SAMEA3714520_01889) | rnpA | 1858939..1859310 (-) | 372 | WP_000739248.1 | ribonuclease P protein component | - |
| E0F31_RS12135 | - | 1859327..1859458 (-) | 132 | WP_000768902.1 | hypothetical protein | - |
| E0F31_RS10030 (SAMEA3714520_01890) | - | 1859459..1860649 (-) | 1191 | WP_050085692.1 | acetate kinase | - |
| E0F31_RS10035 (SAMEA3714520_01891) | comYH | 1860700..1861653 (-) | 954 | WP_000345083.1 | class I SAM-dependent methyltransferase | Machinery gene |
| E0F31_RS10040 (SAMEA3714520_01892) | - | 1861714..1862301 (-) | 588 | WP_000679775.1 | class I SAM-dependent methyltransferase | - |
| E0F31_RS10045 (SAMEA3714520_01893) | comGG/cglG | 1862438..1862851 (-) | 414 | WP_000265617.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| E0F31_RS10050 (SAMEA3714520_01894) | comGF/cglF | 1862829..1863290 (-) | 462 | WP_000250546.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| E0F31_RS10055 (SAMEA3714520_01895) | comGE/cglE | 1863253..1863555 (-) | 303 | WP_257641679.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| E0F31_RS10060 (SAMEA3714520_01896) | comGD/cglD | 1863518..1863922 (-) | 405 | WP_000588016.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| E0F31_RS10065 (SAMEA3714520_01897) | comGC/cglC | 1863915..1864241 (-) | 327 | WP_000738632.1 | comG operon protein ComGC | Machinery gene |
| E0F31_RS10070 (SAMEA3714520_01898) | comGB/cglB | 1864243..1865259 (-) | 1017 | WP_077141332.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| E0F31_RS10075 (SAMEA3714520_01899) | comGA/cglA/cilD | 1865207..1866148 (-) | 942 | WP_000249555.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| E0F31_RS10080 (SAMEA3714520_01900) | - | 1866224..1866589 (-) | 366 | WP_000286415.1 | DUF1033 family protein | - |
| E0F31_RS10085 (SAMEA3714520_01901) | - | 1866740..1867798 (-) | 1059 | WP_000649470.1 | zinc-dependent alcohol dehydrogenase family protein | - |
| E0F31_RS10090 (SAMEA3714520_01902) | nagA | 1867961..1869112 (-) | 1152 | WP_001134457.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 12180.34 Da Isoelectric Point: 10.0305
>NTDB_id=1126299 E0F31_RS10065 WP_000738632.1 1863915..1864241(-) (comGC/cglC) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLEKNEDASLSKLKD
DGRITEEQVKAYKEYNDKNGGANRKVND
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLEKNEDASLSKLKD
DGRITEEQVKAYKEYNDKNGGANRKVND
Nucleotide
Download Length: 327 bp
>NTDB_id=1126299 E0F31_RS10065 WP_000738632.1 1863915..1864241(-) (comGC/cglC) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAGATGTTGGTGGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTGGAAAAGAATGAAGATGCTAGCCTAAGCAAGTTAAAAGAC
GATGGGCGAATCACGGAAGAACAGGTTAAAGCTTATAAAGAATACAATGATAAAAATGGAGGAGCAAATCGTAAAGTCAA
TGATTAA
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAGATGTTGGTGGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTGGAAAAGAATGAAGATGCTAGCCTAAGCAAGTTAAAAGAC
GATGGGCGAATCACGGAAGAACAGGTTAAAGCTTATAAAGAATACAATGATAAAAATGGAGGAGCAAATCGTAAAGTCAA
TGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
96.296 |
100 |
0.963 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
95.37 |
100 |
0.954 |
| comGC/cglC | Streptococcus pneumoniae D39 |
95.37 |
100 |
0.954 |
| comGC/cglC | Streptococcus pneumoniae R6 |
95.37 |
100 |
0.954 |
| comGC/cglC | Streptococcus mitis SK321 |
92.593 |
100 |
0.926 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
91.919 |
91.667 |
0.843 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
66.99 |
95.37 |
0.639 |
| comYC | Streptococcus mutans UA159 |
61.765 |
94.444 |
0.583 |
| comYC | Streptococcus mutans UA140 |
61.765 |
94.444 |
0.583 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
55.882 |
94.444 |
0.528 |
| comYC | Streptococcus suis isolate S10 |
66.667 |
75 |
0.5 |
| comGC | Staphylococcus aureus MW2 |
48.837 |
79.63 |
0.389 |
| comGC | Staphylococcus aureus N315 |
48.837 |
79.63 |
0.389 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
45.349 |
79.63 |
0.361 |