Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACMG4O_RS14555 Genome accession   NZ_CP179934
Coordinates   3105734..3106171 (-) Length   145 a.a.
NCBI ID   WP_414434047.1    Uniprot ID   -
Organism   Alloalcanivorax venustensis strain A6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3100734..3111171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4O_RS14535 (ACMG4O_14535) - 3101491..3102825 (+) 1335 WP_414434044.1 alanine/glycine:cation symporter family protein -
  ACMG4O_RS14540 (ACMG4O_14540) nadC 3102818..3103663 (+) 846 WP_414434045.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMG4O_RS14545 (ACMG4O_14545) - 3103788..3104729 (+) 942 WP_414434046.1 DUF4351 domain-containing protein -
  ACMG4O_RS14550 (ACMG4O_14550) - 3105123..3105482 (+) 360 WP_370185368.1 glycine zipper family protein -
  ACMG4O_RS14555 (ACMG4O_14555) pilA 3105734..3106171 (-) 438 WP_414434047.1 pilin Machinery gene
  ACMG4O_RS14560 (ACMG4O_14560) pilB 3106493..3108214 (+) 1722 WP_414434048.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMG4O_RS14565 (ACMG4O_14565) pilC 3108242..3109465 (+) 1224 WP_414434049.1 type II secretion system F family protein Machinery gene
  ACMG4O_RS14570 (ACMG4O_14570) pilD 3109468..3110352 (+) 885 WP_414434050.1 prepilin peptidase Machinery gene
  ACMG4O_RS14575 (ACMG4O_14575) coaE 3110476..3111078 (+) 603 WP_370209635.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 14446.37 Da        Isoelectric Point: 4.3148

>NTDB_id=1094015 ACMG4O_RS14555 WP_414434047.1 3105734..3106171(-) (pilA) [Alloalcanivorax venustensis strain A6]
MKQVQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRARVAEAMSLASGAKTTVAENASAGAATLDSGWTAPNATDNVAA
VALDGATGTITVTTTAKAGGGNIAYVPSDNNGALAAGTLPEGAITWDCSGAGTTLDAKYLPAECR

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1094015 ACMG4O_RS14555 WP_414434047.1 3105734..3106171(-) (pilA) [Alloalcanivorax venustensis strain A6]
ATGAAACAAGTGCAGAAGGGTTTTACTCTTATCGAACTGATGATCGTAGTTGCTATCATCGGTATTCTGGCGGCCGTAGC
TATCCCGGCTTATCAGGACTATACGGTGCGTGCCCGTGTCGCTGAAGCAATGTCATTGGCGTCTGGTGCGAAAACCACAG
TGGCGGAAAACGCATCTGCGGGTGCAGCTACTCTGGATTCTGGCTGGACTGCGCCTAACGCTACAGATAACGTTGCCGCT
GTCGCGCTTGACGGTGCAACTGGCACTATCACCGTTACTACCACAGCCAAAGCCGGTGGCGGCAATATCGCCTATGTTCC
GTCCGATAATAACGGTGCGCTCGCTGCGGGTACGTTGCCGGAAGGTGCTATCACCTGGGATTGCTCTGGTGCTGGGACCA
CTCTCGACGCTAAGTATTTACCGGCTGAGTGTCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)

Pilin (bacterial filament) (Pilin)

(36-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

52.5

100

0.579
  pilA2 Legionella pneumophila str. Paris

55.862

100

0.559
  pilA2 Legionella pneumophila strain ERS1305867

55.172

100

0.552
  comP Acinetobacter baylyi ADP1

49.359

100

0.531
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.306

100

0.497
  pilA/pilA1 Eikenella corrodens VA1

42.767

100

0.469
  pilE Neisseria gonorrhoeae MS11

37.952

100

0.434
  pilE Neisseria gonorrhoeae strain FA1090

37.278

100

0.434
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.176

100

0.434
  pilA Vibrio campbellii strain DS40M4

39.216

100

0.414
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.816

100

0.414
  pilA Pseudomonas aeruginosa PAK

37.821

100

0.407

Multiple sequence alignment