Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMG4O_RS14565 Genome accession   NZ_CP179934
Coordinates   3108242..3109465 (+) Length   407 a.a.
NCBI ID   WP_414434049.1    Uniprot ID   -
Organism   Alloalcanivorax venustensis strain A6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3103242..3114465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4O_RS14545 (ACMG4O_14545) - 3103788..3104729 (+) 942 WP_414434046.1 DUF4351 domain-containing protein -
  ACMG4O_RS14550 (ACMG4O_14550) - 3105123..3105482 (+) 360 WP_370185368.1 glycine zipper family protein -
  ACMG4O_RS14555 (ACMG4O_14555) pilA 3105734..3106171 (-) 438 WP_414434047.1 pilin Machinery gene
  ACMG4O_RS14560 (ACMG4O_14560) pilB 3106493..3108214 (+) 1722 WP_414434048.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMG4O_RS14565 (ACMG4O_14565) pilC 3108242..3109465 (+) 1224 WP_414434049.1 type II secretion system F family protein Machinery gene
  ACMG4O_RS14570 (ACMG4O_14570) pilD 3109468..3110352 (+) 885 WP_414434050.1 prepilin peptidase Machinery gene
  ACMG4O_RS14575 (ACMG4O_14575) coaE 3110476..3111078 (+) 603 WP_370209635.1 dephospho-CoA kinase -
  ACMG4O_RS14580 (ACMG4O_14580) - 3111038..3111265 (+) 228 WP_414434051.1 DNA gyrase inhibitor YacG -
  ACMG4O_RS14585 (ACMG4O_14585) mutT 3111363..3112367 (-) 1005 WP_414434052.1 8-oxo-dGTP diphosphatase MutT -
  ACMG4O_RS14590 (ACMG4O_14590) argJ 3112430..3113632 (-) 1203 WP_414434053.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 43908.85 Da        Isoelectric Point: 9.6623

>NTDB_id=1094017 ACMG4O_RS14565 WP_414434049.1 3108242..3109465(+) (pilC) [Alloalcanivorax venustensis strain A6]
MAKTATAQKSATFAYEGIDRKGSRVKGEITGKGPALVRAELRKQGIQAKKVVKKREINLGGKKKIKPMDIALFTRQMATM
MKAGVPLVQAFEIVSDGLENPSMRDVVLKLKTDVESGNNFAGALRQHPRLFDDLYCSLIESGEASGSLETMLDRVALYKE
KTEALKQKIKKAVKYPIAVICVAVVVTGILLVKVVPTFQELFEGFGAELPAFTQFVIGLSEGLQANFLMVIIITAALIIG
FTEARKRSQPFHDAVDRLLLRIPVVGPITHKATVARFARTLSTTFAAGVPLIEALDACAGATGNVVYRKAVLQVKEDVAT
GQQLQFAMRSTGVFPAMALQMTAIGEESGALDAMLGKVATYYEDEVDNLVDGLTSMLEPMIMAILGVLIGGLIIAMYLPI
FQLGAVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1094017 ACMG4O_RS14565 WP_414434049.1 3108242..3109465(+) (pilC) [Alloalcanivorax venustensis strain A6]
ATGGCAAAAACAGCGACAGCACAAAAATCGGCCACCTTTGCCTATGAAGGTATCGACCGCAAAGGCAGCCGGGTCAAAGG
GGAAATCACCGGCAAAGGGCCGGCTCTGGTGCGCGCCGAACTGCGCAAGCAGGGCATCCAGGCCAAGAAGGTGGTGAAGA
AGCGCGAGATCAACCTGGGCGGGAAAAAGAAAATCAAGCCCATGGATATTGCCCTCTTTACTCGCCAGATGGCAACCATG
ATGAAAGCCGGCGTACCACTGGTGCAGGCTTTTGAGATCGTTTCCGATGGTCTGGAAAACCCATCTATGCGTGATGTGGT
TCTTAAACTGAAAACCGATGTAGAGAGCGGTAACAACTTCGCCGGAGCACTGCGTCAACATCCACGCCTGTTCGATGATC
TCTATTGTAGCCTGATCGAGTCCGGCGAAGCTTCCGGCTCACTCGAAACGATGTTGGACCGCGTTGCCCTCTATAAAGAA
AAAACCGAAGCGCTAAAGCAGAAAATCAAAAAGGCGGTAAAATATCCTATTGCCGTTATCTGCGTGGCCGTTGTCGTAAC
TGGCATTCTACTGGTCAAAGTGGTTCCTACTTTCCAAGAGCTTTTTGAAGGCTTTGGTGCGGAACTGCCTGCTTTCACGC
AGTTTGTTATTGGGTTATCAGAAGGCCTCCAGGCCAACTTCCTAATGGTCATCATTATTACTGCGGCCTTAATTATTGGT
TTTACGGAAGCCCGTAAGCGGTCACAACCCTTCCATGACGCAGTAGATAGACTTTTGCTTCGTATCCCCGTGGTAGGGCC
GATTACCCATAAAGCCACCGTGGCCCGCTTCGCCCGTACCCTTTCCACCACATTTGCAGCCGGGGTGCCTCTTATTGAAG
CACTGGATGCCTGTGCCGGCGCCACTGGCAATGTGGTTTACCGGAAAGCCGTACTTCAGGTTAAAGAAGACGTGGCGACC
GGCCAGCAACTTCAATTCGCGATGCGCTCCACCGGCGTATTCCCAGCCATGGCGCTGCAGATGACTGCCATCGGTGAAGA
ATCCGGCGCGCTCGACGCCATGCTGGGTAAAGTCGCCACCTACTATGAAGACGAAGTAGATAACCTGGTGGACGGTTTGA
CCAGCATGCTGGAGCCGATGATCATGGCTATCCTCGGCGTGCTCATCGGCGGCCTGATCATCGCCATGTACCTCCCCATC
TTCCAGCTCGGCGCGGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

66.247

97.543

0.646
  pilC Pseudomonas stutzeri DSM 10701

65.586

98.526

0.646
  pilC Acinetobacter baumannii D1279779

64.516

99.017

0.639
  pilC Legionella pneumophila strain ERS1305867

53.401

97.543

0.521
  pilG Neisseria gonorrhoeae MS11

44.03

98.771

0.435
  pilG Neisseria meningitidis 44/76-A

43.781

98.771

0.432
  pilC Vibrio cholerae strain A1552

43.719

97.789

0.428
  pilC Vibrio campbellii strain DS40M4

41.96

97.789

0.41
  pilC Thermus thermophilus HB27

37.624

99.263

0.373

Multiple sequence alignment