Detailed information NTG1094018

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMG4O_RS14570
• Genome accession: NZ_CP179934
• Coordinates: 3109468..3110352 (+)
• Length: 294 a.a.
• NCBI ID: WP_414434050.1
• Uniprot ID: -
• Organism: Alloalcanivorax venustensis strain A6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3104468..3115352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMG4O_RS14550 (ACMG4O_14550)	-	3105123..3105482 (+)	360	WP_370185368.1	glycine zipper family protein	-
ACMG4O_RS14555 (ACMG4O_14555)	pilA	3105734..3106171 (-)	438	WP_414434047.1	pilin	Machinery gene
ACMG4O_RS14560 (ACMG4O_14560)	pilB	3106493..3108214 (+)	1722	WP_414434048.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMG4O_RS14565 (ACMG4O_14565)	pilC	3108242..3109465 (+)	1224	WP_414434049.1	type II secretion system F family protein	Machinery gene
ACMG4O_RS14570 (ACMG4O_14570)	pilD	3109468..3110352 (+)	885	WP_414434050.1	prepilin peptidase	Machinery gene
ACMG4O_RS14575 (ACMG4O_14575)	coaE	3110476..3111078 (+)	603	WP_370209635.1	dephospho-CoA kinase	-
ACMG4O_RS14580 (ACMG4O_14580)	-	3111038..3111265 (+)	228	WP_414434051.1	DNA gyrase inhibitor YacG	-
ACMG4O_RS14585 (ACMG4O_14585)	mutT	3111363..3112367 (-)	1005	WP_414434052.1	8-oxo-dGTP diphosphatase MutT	-
ACMG4O_RS14590 (ACMG4O_14590)	argJ	3112430..3113632 (-)	1203	WP_414434053.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 32132.25 Da
• Isoelectric Point: 7.2162

>NTDB_id=1094018 ACMG4O_RS14570 WP_414434050.1 3109468..3110352(+) (pilD) [Alloalcanivorax venustensis strain A6]
MQLLDYLAASPAALILVCVLFGLLVGSFLNVVIHRIPKMMEATWRREARELLEQPAPKGEAEPPIFNLVTPGSHCPHCNH
RIRWYENVPVVSWALLKGRCSGCKAPISKRYPIIELLTALVAGLCAWRFGYDPWLIFMLYGSFTLLALAVIDLDTTLLPD
DLTYPLLWAGLLAAVMGISPVSLSDAVIGAMAGYLALWSLYWVFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVVVLLS
SVVGLVFAVSMMASGSVKRDQGIPFGPYLAIAGWIALLWGEAIVSSYLGLFNLG

Nucleotide

• Length: 885 bp

>NTDB_id=1094018 ACMG4O_RS14570 WP_414434050.1 3109468..3110352(+) (pilD) [Alloalcanivorax venustensis strain A6]
GTGCAGCTTCTCGATTACCTGGCGGCCAGCCCGGCCGCCCTGATTCTGGTTTGCGTGCTGTTCGGCCTGCTGGTGGGCAG
CTTCCTGAATGTGGTGATTCACCGTATTCCCAAGATGATGGAGGCCACTTGGCGCCGGGAGGCCCGTGAGCTATTGGAGC
AGCCGGCGCCCAAGGGCGAGGCTGAGCCGCCCATCTTCAACCTGGTGACGCCCGGCTCCCACTGCCCGCACTGCAACCAC
CGCATCCGCTGGTACGAGAACGTGCCGGTGGTGAGCTGGGCGCTGCTCAAGGGCCGCTGCAGCGGCTGCAAGGCACCGAT
CAGCAAGCGCTATCCGATTATCGAGCTGCTCACCGCGCTGGTGGCGGGCCTGTGCGCCTGGCGCTTCGGTTACGATCCCT
GGTTGATCTTTATGCTGTACGGCAGCTTTACGCTCCTGGCCCTGGCGGTGATTGATCTGGACACCACCCTGTTGCCGGAC
GATCTCACCTACCCGCTGTTGTGGGCGGGCCTGCTGGCCGCGGTAATGGGCATCTCCCCGGTGAGCCTGTCCGATGCGGT
GATCGGGGCCATGGCCGGCTATCTGGCGCTGTGGAGCCTGTACTGGGTGTTCAAGCTGCTCACCGGCAAGGAGGGCATGG
GCTACGGCGACTTCAAGCTGCTCGCCGCCCTGGGCGCCTGGCTGGGCTGGCAGTATCTGCCGGTGGTGGTGCTGCTCTCC
TCCGTGGTGGGTCTGGTGTTCGCGGTGTCGATGATGGCCAGCGGCAGCGTGAAGCGGGATCAGGGGATCCCGTTCGGGCC
CTATCTGGCGATCGCCGGGTGGATCGCGTTGCTCTGGGGTGAGGCGATTGTGAGCTCCTACCTGGGGCTGTTTAACCTCG
GGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-129)

• Type IV leader peptidase family (Peptidase_A24) (141-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.182	93.537	0.544
pilD	Vibrio campbellii strain DS40M4	53.793	98.639	0.531
pilD	Neisseria gonorrhoeae MS11	48.029	94.898	0.456
pilD	Acinetobacter baumannii D1279779	46.528	97.959	0.456
pilD	Acinetobacter nosocomialis M2	45.833	97.959	0.449