Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACFJIX_RS11205 | Genome accession | NZ_CP170545 |
| Coordinates | 2420649..2421785 (-) | Length | 378 a.a. |
| NCBI ID | WP_088407837.1 | Uniprot ID | - |
| Organism | Roseateles sp. UC29_93 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2415649..2426785
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFJIX_RS11195 (ACFJIX_11195) | - | 2418165..2419583 (+) | 1419 | WP_377159994.1 | efflux transporter outer membrane subunit | - |
| ACFJIX_RS11200 (ACFJIX_11200) | - | 2419680..2420582 (-) | 903 | WP_377159996.1 | NAD(P)-dependent oxidoreductase | - |
| ACFJIX_RS11205 (ACFJIX_11205) | pilU | 2420649..2421785 (-) | 1137 | WP_088407837.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACFJIX_RS11210 (ACFJIX_11210) | pilT | 2421871..2422914 (-) | 1044 | WP_377159998.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACFJIX_RS11215 (ACFJIX_11215) | - | 2422940..2423671 (+) | 732 | WP_377160000.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACFJIX_RS11220 (ACFJIX_11220) | - | 2424689..2425209 (+) | 521 | Protein_2209 | GGDEF domain-containing protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42204.53 Da Isoelectric Point: 6.8859
>NTDB_id=1057881 ACFJIX_RS11205 WP_088407837.1 2420649..2421785(-) (pilU) [Roseateles sp. UC29_93]
MERDQATKFINDLLRLMVSRKGSDLFLTAEFPPAVKVDGKVTKVSPQPLTGQHTLQLARAIMNDKQAADFERTKECNFAI
SPQGIGRFRVNAYIQQGHVALVLRTIPQTLPTVESLELPHILKDVVQTKRGLVILVGATGSGKSTSLAAMVDHRNQTTYG
HIITIEDPVEFVHPHKNCIVSQREVGLDTEGWEQALKNTLRQAPDVILMGEIRDRETMEHAVAFAETGHLCMATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLKALVSQRLLPRQEGKGRIAAVEILLNTPLISDLIFKGEVGEIKEIMKRSRELG
MQTFDQALFDLYEMGKVTYEDALRNADSVNDLRLQIKLNSERARSGDLSSGTEHLTIV
MERDQATKFINDLLRLMVSRKGSDLFLTAEFPPAVKVDGKVTKVSPQPLTGQHTLQLARAIMNDKQAADFERTKECNFAI
SPQGIGRFRVNAYIQQGHVALVLRTIPQTLPTVESLELPHILKDVVQTKRGLVILVGATGSGKSTSLAAMVDHRNQTTYG
HIITIEDPVEFVHPHKNCIVSQREVGLDTEGWEQALKNTLRQAPDVILMGEIRDRETMEHAVAFAETGHLCMATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLKALVSQRLLPRQEGKGRIAAVEILLNTPLISDLIFKGEVGEIKEIMKRSRELG
MQTFDQALFDLYEMGKVTYEDALRNADSVNDLRLQIKLNSERARSGDLSSGTEHLTIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=1057881 ACFJIX_RS11205 WP_088407837.1 2420649..2421785(-) (pilU) [Roseateles sp. UC29_93]
ATGGAACGCGATCAGGCCACCAAGTTCATCAACGACCTGCTTCGCCTGATGGTGTCGCGCAAGGGCTCCGACCTGTTCCT
GACGGCGGAGTTCCCGCCGGCGGTCAAGGTCGACGGCAAGGTGACCAAGGTGTCGCCGCAACCGCTGACCGGCCAGCACA
CGCTGCAGCTGGCGCGGGCCATCATGAACGACAAGCAGGCGGCCGATTTCGAACGCACCAAGGAGTGCAACTTCGCGATC
TCGCCGCAAGGCATCGGCCGCTTCCGCGTCAACGCCTACATCCAGCAGGGCCACGTGGCGCTGGTGCTGCGGACGATCCC
GCAGACGCTGCCAACCGTCGAGTCGCTGGAACTGCCGCACATCCTCAAGGACGTGGTGCAGACCAAGCGCGGCCTGGTGA
TCCTGGTGGGCGCGACCGGTTCGGGCAAGAGCACCTCGCTGGCGGCGATGGTGGACCACCGCAACCAGACGACCTACGGC
CACATCATCACGATCGAGGACCCGGTCGAGTTCGTGCACCCGCACAAGAACTGCATCGTCAGCCAGCGCGAGGTCGGCCT
CGACACCGAAGGCTGGGAGCAGGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGCGAGATCCGCG
ACCGCGAGACGATGGAGCACGCGGTGGCCTTCGCTGAAACGGGTCACCTGTGCATGGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGCTGGACCGGATCATCAACTTCTTCCCGGAAGAGCGGCGCGCGCAGCTGCTGATGGACCTGTCGCTCAACCT
GAAGGCGCTGGTGTCGCAGCGGCTGCTGCCGCGCCAGGAAGGCAAGGGCCGGATCGCCGCGGTCGAGATCCTGCTGAACA
CGCCGCTGATCAGCGACCTGATCTTCAAGGGCGAGGTGGGCGAGATCAAGGAGATCATGAAGCGCTCGCGCGAGCTCGGC
ATGCAAACCTTCGACCAGGCGCTGTTCGATCTCTACGAGATGGGCAAGGTGACCTACGAGGACGCGCTGCGCAACGCCGA
CTCCGTGAACGACCTGCGCCTGCAGATCAAGCTCAACAGCGAGCGGGCGCGCAGCGGCGATCTGTCGTCGGGCACCGAGC
ATCTGACCATCGTCTGA
ATGGAACGCGATCAGGCCACCAAGTTCATCAACGACCTGCTTCGCCTGATGGTGTCGCGCAAGGGCTCCGACCTGTTCCT
GACGGCGGAGTTCCCGCCGGCGGTCAAGGTCGACGGCAAGGTGACCAAGGTGTCGCCGCAACCGCTGACCGGCCAGCACA
CGCTGCAGCTGGCGCGGGCCATCATGAACGACAAGCAGGCGGCCGATTTCGAACGCACCAAGGAGTGCAACTTCGCGATC
TCGCCGCAAGGCATCGGCCGCTTCCGCGTCAACGCCTACATCCAGCAGGGCCACGTGGCGCTGGTGCTGCGGACGATCCC
GCAGACGCTGCCAACCGTCGAGTCGCTGGAACTGCCGCACATCCTCAAGGACGTGGTGCAGACCAAGCGCGGCCTGGTGA
TCCTGGTGGGCGCGACCGGTTCGGGCAAGAGCACCTCGCTGGCGGCGATGGTGGACCACCGCAACCAGACGACCTACGGC
CACATCATCACGATCGAGGACCCGGTCGAGTTCGTGCACCCGCACAAGAACTGCATCGTCAGCCAGCGCGAGGTCGGCCT
CGACACCGAAGGCTGGGAGCAGGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGCGAGATCCGCG
ACCGCGAGACGATGGAGCACGCGGTGGCCTTCGCTGAAACGGGTCACCTGTGCATGGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGCTGGACCGGATCATCAACTTCTTCCCGGAAGAGCGGCGCGCGCAGCTGCTGATGGACCTGTCGCTCAACCT
GAAGGCGCTGGTGTCGCAGCGGCTGCTGCCGCGCCAGGAAGGCAAGGGCCGGATCGCCGCGGTCGAGATCCTGCTGAACA
CGCCGCTGATCAGCGACCTGATCTTCAAGGGCGAGGTGGGCGAGATCAAGGAGATCATGAAGCGCTCGCGCGAGCTCGGC
ATGCAAACCTTCGACCAGGCGCTGTTCGATCTCTACGAGATGGGCAAGGTGACCTACGAGGACGCGCTGCGCAACGCCGA
CTCCGTGAACGACCTGCGCCTGCAGATCAAGCTCAACAGCGAGCGGGCGCGCAGCGGCGATCTGTCGTCGGGCACCGAGC
ATCTGACCATCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
62.295 |
96.825 |
0.603 |
| pilU | Acinetobacter baylyi ADP1 |
57.66 |
94.974 |
0.548 |
| pilU | Vibrio cholerae strain A1552 |
53.719 |
96.032 |
0.516 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.697 |
89.153 |
0.407 |
| pilT | Pseudomonas aeruginosa PAK |
44.51 |
89.153 |
0.397 |
| pilT | Acinetobacter baylyi ADP1 |
43.544 |
88.095 |
0.384 |
| pilT | Pseudomonas stutzeri DSM 10701 |
43.027 |
89.153 |
0.384 |
| pilT | Acinetobacter baumannii D1279779 |
43.243 |
88.095 |
0.381 |
| pilT | Acinetobacter nosocomialis M2 |
43.243 |
88.095 |
0.381 |
| pilT | Acinetobacter baumannii strain A118 |
43.243 |
88.095 |
0.381 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.598 |
86.772 |
0.378 |
| pilT | Vibrio cholerae strain A1552 |
43.598 |
86.772 |
0.378 |
| pilT | Legionella pneumophila strain ERS1305867 |
43.789 |
85.185 |
0.373 |
| pilT | Legionella pneumophila strain Lp02 |
43.789 |
85.185 |
0.373 |