Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8588_RS06650 Genome accession   NZ_AP028401
Coordinates   1279497..1280012 (-) Length   171 a.a.
NCBI ID   WP_002888104.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11527     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1274497..1285012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8588_RS06635 (B11527_13090) - 1274602..1276416 (-) 1815 WP_317649950.1 motility associated factor glycosyltransferase family protein -
  R8588_RS06640 (B11527_13100) - 1276413..1278236 (-) 1824 WP_317649952.1 motility associated factor glycosyltransferase family protein -
  R8588_RS06645 (B11527_13110) - 1278247..1279497 (-) 1251 WP_002888105.1 DUF2920 family protein -
  R8588_RS06650 (B11527_13120) ctsG 1279497..1280012 (-) 516 WP_002888104.1 type II secretion system protein Machinery gene
  R8588_RS06655 (B11527_13130) tsaD 1280013..1281020 (-) 1008 WP_002868457.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8588_RS06660 (B11527_13140) - 1281017..1282411 (-) 1395 WP_002888103.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8588_RS06665 (B11527_13150) dxr 1282413..1283483 (-) 1071 WP_002867315.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8588_RS06670 (B11527_13160) cdsA 1283480..1284205 (-) 726 WP_002888102.1 phosphatidate cytidylyltransferase -
  R8588_RS06675 (B11527_13170) - 1284214..1284552 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18636.48 Da        Isoelectric Point: 6.4682

>NTDB_id=105474 R8588_RS06650 WP_002888104.1 1279497..1280012(-) (ctsG) [Campylobacter jejuni strain BCH-11527]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105474 R8588_RS06650 WP_002888104.1 1279497..1280012(-) (ctsG) [Campylobacter jejuni strain BCH-11527]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment